Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sdc4O35988 Gfra2-202ENSMUST00000227633 1480 ntBASIC17.09■□□□□ 0.33
Sdc4O35988 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sdc4O35988 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sdc4O35988 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sdc4O35988 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sdc4O35988 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sdc4O35988 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC17.09■□□□□ 0.33
Sdc4O35988 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sdc4O35988 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sdc4O35988 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Sdc4O35988 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC17.08■□□□□ 0.33
Sdc4O35988 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Sdc4O35988 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Sdc4O35988 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Sdc4O35988 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Sdc4O35988 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Sdc4O35988 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Sdc4O35988 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Sdc4O35988 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Sdc4O35988 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Sdc4O35988 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Sdc4O35988 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC17.08■□□□□ 0.33
Sdc4O35988 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Sdc4O35988 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Sdc4O35988 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
Sdc4O35988 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC17.08■□□□□ 0.32
Sdc4O35988 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Sdc4O35988 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC17.08■□□□□ 0.32
Sdc4O35988 AC121598.2-201ENSMUST00000228376 2325 ntBASIC17.08■□□□□ 0.32
Sdc4O35988 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Sdc4O35988 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Sdc4O35988 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Sdc4O35988 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sdc4O35988 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Sdc4O35988 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sdc4O35988 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Sdc4O35988 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sdc4O35988 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sdc4O35988 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sdc4O35988 Gm19439-201ENSMUST00000198195 2273 ntBASIC17.07■□□□□ 0.32
Sdc4O35988 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sdc4O35988 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sdc4O35988 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sdc4O35988 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC17.07■□□□□ 0.32
Sdc4O35988 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Sdc4O35988 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC17.07■□□□□ 0.32
Sdc4O35988 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC17.07■□□□□ 0.32
Sdc4O35988 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Sdc4O35988 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sdc4O35988 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC17.07■□□□□ 0.32
Sdc4O35988 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Sdc4O35988 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sdc4O35988 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sdc4O35988 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC17.07■□□□□ 0.32
Sdc4O35988 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sdc4O35988 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sdc4O35988 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Sdc4O35988 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sdc4O35988 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sdc4O35988 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sdc4O35988 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Sdc4O35988 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Sdc4O35988 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sdc4O35988 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sdc4O35988 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sdc4O35988 Gm14464-201ENSMUST00000119658 1254 ntBASIC17.06■□□□□ 0.32
Sdc4O35988 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC17.06■□□□□ 0.32
Sdc4O35988 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Sdc4O35988 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC17.06■□□□□ 0.32
Sdc4O35988 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Sdc4O35988 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sdc4O35988 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Sdc4O35988 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sdc4O35988 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sdc4O35988 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Sdc4O35988 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Sdc4O35988 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sdc4O35988 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sdc4O35988 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sdc4O35988 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
Sdc4O35988 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC17.05■□□□□ 0.32
Sdc4O35988 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sdc4O35988 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
Sdc4O35988 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sdc4O35988 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sdc4O35988 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
Sdc4O35988 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sdc4O35988 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Sdc4O35988 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sdc4O35988 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sdc4O35988 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sdc4O35988 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sdc4O35988 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sdc4O35988 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sdc4O35988 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sdc4O35988 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Sdc4O35988 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sdc4O35988 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC17.04■□□□□ 0.32
Sdc4O35988 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms