Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Chd3B1AR17 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
Chd3B1AR17 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Chd3B1AR17 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Chd3B1AR17 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Chd3B1AR17 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Chd3B1AR17 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Chd3B1AR17 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Chd3B1AR17 Gm12644-201ENSMUST00000119935 606 ntBASIC16.2■□□□□ 0.18
Chd3B1AR17 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC16.2■□□□□ 0.18
Chd3B1AR17 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC16.2■□□□□ 0.18
Chd3B1AR17 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Chd3B1AR17 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Chd3B1AR17 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Chd3B1AR17 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Chd3B1AR17 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd3B1AR17 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd3B1AR17 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd3B1AR17 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd3B1AR17 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd3B1AR17 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd3B1AR17 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd3B1AR17 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC16.19■□□□□ 0.18
Chd3B1AR17 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC16.19■□□□□ 0.18
Chd3B1AR17 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd3B1AR17 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Chd3B1AR17 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Chd3B1AR17 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd3B1AR17 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd3B1AR17 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd3B1AR17 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd3B1AR17 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC16.19■□□□□ 0.18
Chd3B1AR17 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Chd3B1AR17 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd3B1AR17 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd3B1AR17 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chd3B1AR17 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC16.18■□□□□ 0.18
Chd3B1AR17 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC16.18■□□□□ 0.18
Chd3B1AR17 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd3B1AR17 AC121598.2-201ENSMUST00000228376 2325 ntBASIC16.18■□□□□ 0.18
Chd3B1AR17 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Chd3B1AR17 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd3B1AR17 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd3B1AR17 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd3B1AR17 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd3B1AR17 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd3B1AR17 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Chd3B1AR17 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd3B1AR17 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd3B1AR17 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd3B1AR17 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Chd3B1AR17 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC16.18■□□□□ 0.18
Chd3B1AR17 Gm15372-201ENSMUST00000120729 834 ntBASIC16.18■□□□□ 0.18
Chd3B1AR17 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC16.18■□□□□ 0.18
Chd3B1AR17 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Chd3B1AR17 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chd3B1AR17 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Chd3B1AR17 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Chd3B1AR17 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC16.18■□□□□ 0.18
Chd3B1AR17 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC16.17■□□□□ 0.18
Chd3B1AR17 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chd3B1AR17 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chd3B1AR17 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC16.17■□□□□ 0.18
Chd3B1AR17 AC114585.2-202ENSMUST00000228094 426 ntBASIC16.17■□□□□ 0.18
Chd3B1AR17 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chd3B1AR17 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chd3B1AR17 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chd3B1AR17 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chd3B1AR17 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chd3B1AR17 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chd3B1AR17 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Chd3B1AR17 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chd3B1AR17 Gm7935-201ENSMUST00000100555 1278 ntBASIC16.17■□□□□ 0.18
Chd3B1AR17 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Chd3B1AR17 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC16.17■□□□□ 0.18
Chd3B1AR17 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC16.17■□□□□ 0.18
Chd3B1AR17 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC16.17■□□□□ 0.18
Chd3B1AR17 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC16.17■□□□□ 0.18
Chd3B1AR17 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Chd3B1AR17 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Chd3B1AR17 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chd3B1AR17 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Chd3B1AR17 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chd3B1AR17 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chd3B1AR17 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chd3B1AR17 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chd3B1AR17 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chd3B1AR17 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chd3B1AR17 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Chd3B1AR17 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chd3B1AR17 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chd3B1AR17 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Chd3B1AR17 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chd3B1AR17 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chd3B1AR17 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Chd3B1AR17 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Chd3B1AR17 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chd3B1AR17 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
Chd3B1AR17 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chd3B1AR17 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC16.15■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms