Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Prpf40aQ9R1C7 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Prpf40aQ9R1C7 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
Prpf40aQ9R1C7 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Prpf40aQ9R1C7 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC18.29■□□□□ 0.52
Prpf40aQ9R1C7 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Prpf40aQ9R1C7 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Prpf40aQ9R1C7 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Prpf40aQ9R1C7 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Prpf40aQ9R1C7 Gm26596-201ENSMUST00000180464 2655 ntBASIC18.28■□□□□ 0.52
Prpf40aQ9R1C7 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
Prpf40aQ9R1C7 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Prpf40aQ9R1C7 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC18.28■□□□□ 0.52
Prpf40aQ9R1C7 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC18.28■□□□□ 0.52
Prpf40aQ9R1C7 Gm18959-201ENSMUST00000208954 655 ntBASIC18.28■□□□□ 0.52
Prpf40aQ9R1C7 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Prpf40aQ9R1C7 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
Prpf40aQ9R1C7 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Prpf40aQ9R1C7 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Prpf40aQ9R1C7 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
Prpf40aQ9R1C7 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Prpf40aQ9R1C7 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Prpf40aQ9R1C7 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Prpf40aQ9R1C7 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Prpf40aQ9R1C7 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Prpf40aQ9R1C7 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Prpf40aQ9R1C7 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Prpf40aQ9R1C7 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Prpf40aQ9R1C7 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Prpf40aQ9R1C7 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Prpf40aQ9R1C7 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Prpf40aQ9R1C7 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Prpf40aQ9R1C7 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Prpf40aQ9R1C7 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Prpf40aQ9R1C7 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Prpf40aQ9R1C7 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Prpf40aQ9R1C7 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Prpf40aQ9R1C7 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Prpf40aQ9R1C7 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC18.27■□□□□ 0.52
Prpf40aQ9R1C7 Gm27000-201ENSMUST00000182943 842 ntBASIC18.27■□□□□ 0.52
Prpf40aQ9R1C7 Gm45058-201ENSMUST00000205810 766 ntBASIC18.27■□□□□ 0.52
Prpf40aQ9R1C7 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Prpf40aQ9R1C7 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Prpf40aQ9R1C7 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Prpf40aQ9R1C7 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Prpf40aQ9R1C7 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Prpf40aQ9R1C7 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf40aQ9R1C7 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Prpf40aQ9R1C7 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Prpf40aQ9R1C7 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Prpf40aQ9R1C7 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Prpf40aQ9R1C7 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC18.24■□□□□ 0.51
Prpf40aQ9R1C7 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Prpf40aQ9R1C7 Mir5130-201ENSMUST00000175160 84 ntBASIC18.24■□□□□ 0.51
Prpf40aQ9R1C7 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC18.24■□□□□ 0.51
Prpf40aQ9R1C7 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC18.24■□□□□ 0.51
Prpf40aQ9R1C7 Gm7370-201ENSMUST00000219471 767 ntBASIC18.24■□□□□ 0.51
Prpf40aQ9R1C7 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Prpf40aQ9R1C7 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Prpf40aQ9R1C7 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms