Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scn11aQ9R053 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Scn11aQ9R053 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scn11aQ9R053 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scn11aQ9R053 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Scn11aQ9R053 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scn11aQ9R053 Gm4459-201ENSMUST00000118750 468 ntBASIC19.67■□□□□ 0.74
Scn11aQ9R053 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC19.67■□□□□ 0.74
Scn11aQ9R053 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Scn11aQ9R053 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scn11aQ9R053 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Scn11aQ9R053 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scn11aQ9R053 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn11aQ9R053 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn11aQ9R053 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn11aQ9R053 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Scn11aQ9R053 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn11aQ9R053 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn11aQ9R053 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
Scn11aQ9R053 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn11aQ9R053 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn11aQ9R053 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn11aQ9R053 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
Scn11aQ9R053 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Scn11aQ9R053 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Gm16401-202ENSMUST00000197463 2074 ntBASIC19.65■□□□□ 0.74
Scn11aQ9R053 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Scn11aQ9R053 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Gm5898-201ENSMUST00000121016 2071 ntBASIC19.65■□□□□ 0.74
Scn11aQ9R053 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scn11aQ9R053 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
Scn11aQ9R053 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Scn11aQ9R053 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Scn11aQ9R053 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Scn11aQ9R053 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Scn11aQ9R053 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Scn11aQ9R053 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Scn11aQ9R053 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Scn11aQ9R053 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Scn11aQ9R053 Gm25990-201ENSMUST00000102440 86 ntBASIC19.64■□□□□ 0.73
Scn11aQ9R053 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
Scn11aQ9R053 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Scn11aQ9R053 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC19.64■□□□□ 0.73
Scn11aQ9R053 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Scn11aQ9R053 Gm45606-201ENSMUST00000209836 2795 ntBASIC19.64■□□□□ 0.73
Scn11aQ9R053 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Scn11aQ9R053 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Scn11aQ9R053 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Scn11aQ9R053 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Scn11aQ9R053 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Scn11aQ9R053 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC19.63■□□□□ 0.73
Scn11aQ9R053 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Scn11aQ9R053 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Scn11aQ9R053 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Scn11aQ9R053 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Scn11aQ9R053 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Scn11aQ9R053 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Scn11aQ9R053 Gm8784-201ENSMUST00000222096 1435 ntBASIC19.63■□□□□ 0.73
Scn11aQ9R053 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Scn11aQ9R053 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Scn11aQ9R053 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scn11aQ9R053 AC160338.1-201ENSMUST00000214232 705 ntBASIC19.62■□□□□ 0.73
Scn11aQ9R053 Gm5186-201ENSMUST00000218781 920 ntBASIC19.62■□□□□ 0.73
Scn11aQ9R053 Gm6296-201ENSMUST00000222599 943 ntBASIC19.62■□□□□ 0.73
Scn11aQ9R053 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Scn11aQ9R053 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC19.62■□□□□ 0.73
Scn11aQ9R053 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Scn11aQ9R053 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scn11aQ9R053 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scn11aQ9R053 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Scn11aQ9R053 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scn11aQ9R053 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scn11aQ9R053 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scn11aQ9R053 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scn11aQ9R053 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Scn11aQ9R053 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scn11aQ9R053 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC19.61■□□□□ 0.73
Scn11aQ9R053 Gm12350-201ENSMUST00000121208 462 ntBASIC19.61■□□□□ 0.73
Scn11aQ9R053 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
Scn11aQ9R053 Mir6404-201ENSMUST00000183699 94 ntBASIC19.61■□□□□ 0.73
Scn11aQ9R053 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scn11aQ9R053 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms