Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
Scn4aQ9ER60 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC22.77■■□□□ 1.24
Scn4aQ9ER60 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC22.77■■□□□ 1.23
Scn4aQ9ER60 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.23
Scn4aQ9ER60 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Scn4aQ9ER60 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC22.76■■□□□ 1.23
Scn4aQ9ER60 Gm13223-201ENSMUST00000118609 747 ntBASIC22.76■■□□□ 1.23
Scn4aQ9ER60 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC22.76■■□□□ 1.23
Scn4aQ9ER60 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Scn4aQ9ER60 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Scn4aQ9ER60 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC22.76■■□□□ 1.23
Scn4aQ9ER60 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC22.76■■□□□ 1.23
Scn4aQ9ER60 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Scn4aQ9ER60 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Scn4aQ9ER60 Cdk7-205ENSMUST00000225990 1159 ntBASIC22.76■■□□□ 1.23
Scn4aQ9ER60 CT025626.1-201ENSMUST00000223735 1455 ntBASIC22.76■■□□□ 1.23
Scn4aQ9ER60 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Scn4aQ9ER60 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Scn4aQ9ER60 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
Scn4aQ9ER60 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Scn4aQ9ER60 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC22.76■■□□□ 1.23
Scn4aQ9ER60 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Scn4aQ9ER60 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Scn4aQ9ER60 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Scn4aQ9ER60 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC22.75■■□□□ 1.23
Scn4aQ9ER60 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Scn4aQ9ER60 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
Scn4aQ9ER60 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC22.75■■□□□ 1.23
Scn4aQ9ER60 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC22.75■■□□□ 1.23
Scn4aQ9ER60 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Scn4aQ9ER60 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Scn4aQ9ER60 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC22.75■■□□□ 1.23
Scn4aQ9ER60 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC22.75■■□□□ 1.23
Scn4aQ9ER60 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC22.75■■□□□ 1.23
Scn4aQ9ER60 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Scn4aQ9ER60 Gm18889-201ENSMUST00000174284 929 ntBASIC22.75■■□□□ 1.23
Scn4aQ9ER60 Gm7774-201ENSMUST00000200064 533 ntBASIC22.75■■□□□ 1.23
Scn4aQ9ER60 AC124732.2-201ENSMUST00000221977 316 ntBASIC22.75■■□□□ 1.23
Scn4aQ9ER60 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Scn4aQ9ER60 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC22.75■■□□□ 1.23
Scn4aQ9ER60 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Scn4aQ9ER60 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Scn4aQ9ER60 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Scn4aQ9ER60 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Scn4aQ9ER60 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
Scn4aQ9ER60 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC22.74■■□□□ 1.23
Scn4aQ9ER60 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC22.74■■□□□ 1.23
Scn4aQ9ER60 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC22.74■■□□□ 1.23
Scn4aQ9ER60 Gm45203-201ENSMUST00000206384 1831 ntBASIC22.74■■□□□ 1.23
Scn4aQ9ER60 AC125311.2-201ENSMUST00000227477 1940 ntBASIC22.74■■□□□ 1.23
Scn4aQ9ER60 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC22.74■■□□□ 1.23
Scn4aQ9ER60 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Scn4aQ9ER60 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Scn4aQ9ER60 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Scn4aQ9ER60 Rprl2-201ENSMUST00000157150 290 ntBASIC22.73■■□□□ 1.23
Scn4aQ9ER60 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Scn4aQ9ER60 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
Scn4aQ9ER60 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC22.73■■□□□ 1.23
Scn4aQ9ER60 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Scn4aQ9ER60 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC22.73■■□□□ 1.23
Scn4aQ9ER60 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
Scn4aQ9ER60 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Scn4aQ9ER60 Gm15222-202ENSMUST00000228667 1726 ntBASIC22.73■■□□□ 1.23
Scn4aQ9ER60 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC22.73■■□□□ 1.23
Scn4aQ9ER60 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC22.73■■□□□ 1.23
Scn4aQ9ER60 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC22.73■■□□□ 1.23
Scn4aQ9ER60 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Scn4aQ9ER60 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm22065-201ENSMUST00000103753 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm22066-201ENSMUST00000103761 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm24932-201ENSMUST00000103763 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm24115-201ENSMUST00000103799 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm22190-201ENSMUST00000103827 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm22191-201ENSMUST00000103831 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm24721-201ENSMUST00000103849 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm28018-201ENSMUST00000103869 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm26399-201ENSMUST00000103937 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm25349-201ENSMUST00000177728 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm23616-201ENSMUST00000177797 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm25871-201ENSMUST00000177816 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm24752-201ENSMUST00000178240 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm24496-201ENSMUST00000178287 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm25649-201ENSMUST00000178476 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm25548-201ENSMUST00000178681 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm23147-201ENSMUST00000178841 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm26095-201ENSMUST00000179270 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm22171-201ENSMUST00000179283 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm23936-201ENSMUST00000179354 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm22619-201ENSMUST00000179516 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm25255-201ENSMUST00000179579 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm24755-201ENSMUST00000179691 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm26506-201ENSMUST00000179692 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm25086-201ENSMUST00000179931 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm23243-201ENSMUST00000180047 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm24659-201ENSMUST00000180212 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm24169-201ENSMUST00000180244 110 ntBASIC22.72■■□□□ 1.23
Scn4aQ9ER60 Gm23689-201ENSMUST00000180354 110 ntBASIC22.72■■□□□ 1.23
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms