Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Cdc40Q9DC48 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cdc40Q9DC48 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cdc40Q9DC48 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cdc40Q9DC48 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC15.45■□□□□ 0.06
Cdc40Q9DC48 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC15.45■□□□□ 0.06
Cdc40Q9DC48 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cdc40Q9DC48 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cdc40Q9DC48 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cdc40Q9DC48 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cdc40Q9DC48 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cdc40Q9DC48 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
Cdc40Q9DC48 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cdc40Q9DC48 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cdc40Q9DC48 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cdc40Q9DC48 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
Cdc40Q9DC48 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Cdc40Q9DC48 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Cdc40Q9DC48 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC15.45■□□□□ 0.06
Cdc40Q9DC48 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
Cdc40Q9DC48 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Spsb2-203ENSMUST00000112473 1322 ntBASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Gm16499-203ENSMUST00000204633 2177 ntBASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Gm25016-201ENSMUST00000158399 131 ntBASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Gm7370-201ENSMUST00000219471 767 ntBASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Il3ra-202ENSMUST00000223589 738 ntBASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Cdc40Q9DC48 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Gm7213-201ENSMUST00000215977 950 ntBASIC15.43■□□□□ 0.06
Cdc40Q9DC48 AC120002.2-201ENSMUST00000220205 773 ntBASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Gm21559-201ENSMUST00000220638 855 ntBASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Gm8587-201ENSMUST00000076538 843 ntBASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
Cdc40Q9DC48 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Cdc40Q9DC48 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 50.2 ms