Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC17.56■□□□□ 0.4
Usp11Q99K46 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp11Q99K46 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC17.56■□□□□ 0.4
Usp11Q99K46 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC17.56■□□□□ 0.4
Usp11Q99K46 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Usp11Q99K46 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp11Q99K46 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp11Q99K46 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp11Q99K46 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp11Q99K46 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp11Q99K46 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Usp11Q99K46 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Usp11Q99K46 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp11Q99K46 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp11Q99K46 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp11Q99K46 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp11Q99K46 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC17.55■□□□□ 0.4
Usp11Q99K46 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC17.55■□□□□ 0.4
Usp11Q99K46 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp11Q99K46 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp11Q99K46 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp11Q99K46 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp11Q99K46 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Usp11Q99K46 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Usp11Q99K46 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp11Q99K46 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp11Q99K46 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Usp11Q99K46 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp11Q99K46 Gm26596-201ENSMUST00000180464 2655 ntBASIC17.55■□□□□ 0.4
Usp11Q99K46 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Usp11Q99K46 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Usp11Q99K46 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp11Q99K46 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp11Q99K46 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp11Q99K46 Gm19721-201ENSMUST00000195284 1764 ntBASIC17.54■□□□□ 0.4
Usp11Q99K46 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp11Q99K46 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Usp11Q99K46 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Usp11Q99K46 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC17.54■□□□□ 0.4
Usp11Q99K46 Gm30025-201ENSMUST00000218555 728 ntBASIC17.54■□□□□ 0.4
Usp11Q99K46 AC125311.2-201ENSMUST00000227477 1940 ntBASIC17.54■□□□□ 0.4
Usp11Q99K46 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp11Q99K46 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
Usp11Q99K46 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp11Q99K46 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp11Q99K46 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp11Q99K46 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp11Q99K46 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp11Q99K46 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp11Q99K46 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Usp11Q99K46 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp11Q99K46 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp11Q99K46 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC17.53■□□□□ 0.4
Usp11Q99K46 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC17.53■□□□□ 0.4
Usp11Q99K46 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp11Q99K46 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Usp11Q99K46 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Usp11Q99K46 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp11Q99K46 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp11Q99K46 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp11Q99K46 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp11Q99K46 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp11Q99K46 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Usp11Q99K46 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp11Q99K46 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp11Q99K46 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usp11Q99K46 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usp11Q99K46 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Usp11Q99K46 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Usp11Q99K46 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Usp11Q99K46 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usp11Q99K46 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usp11Q99K46 Gm15565-201ENSMUST00000118890 427 ntBASIC17.52■□□□□ 0.4
Usp11Q99K46 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC17.52■□□□□ 0.4
Usp11Q99K46 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usp11Q99K46 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usp11Q99K46 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Usp11Q99K46 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Usp11Q99K46 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Usp11Q99K46 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Usp11Q99K46 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Usp11Q99K46 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp11Q99K46 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Usp11Q99K46 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Usp11Q99K46 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp11Q99K46 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC17.51■□□□□ 0.39
Usp11Q99K46 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp11Q99K46 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC17.51■□□□□ 0.39
Usp11Q99K46 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Usp11Q99K46 Gm37025-201ENSMUST00000195159 829 ntBASIC17.51■□□□□ 0.39
Usp11Q99K46 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp11Q99K46 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp11Q99K46 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp11Q99K46 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Usp11Q99K46 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Usp11Q99K46 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp11Q99K46 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp11Q99K46 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp11Q99K46 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC17.51■□□□□ 0.39
Usp11Q99K46 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms