Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim47Q8C0E3 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim47Q8C0E3 Gm15794-201ENSMUST00000120182 631 ntBASIC18.43■□□□□ 0.54
Trim47Q8C0E3 Gm27742-201ENSMUST00000184667 60 ntBASIC18.43■□□□□ 0.54
Trim47Q8C0E3 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim47Q8C0E3 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trim47Q8C0E3 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trim47Q8C0E3 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trim47Q8C0E3 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim47Q8C0E3 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim47Q8C0E3 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim47Q8C0E3 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim47Q8C0E3 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim47Q8C0E3 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trim47Q8C0E3 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Trim47Q8C0E3 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trim47Q8C0E3 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim47Q8C0E3 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Trim47Q8C0E3 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim47Q8C0E3 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim47Q8C0E3 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trim47Q8C0E3 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim47Q8C0E3 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Trim47Q8C0E3 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC18.42■□□□□ 0.54
Trim47Q8C0E3 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trim47Q8C0E3 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim47Q8C0E3 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim47Q8C0E3 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim47Q8C0E3 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Trim47Q8C0E3 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim47Q8C0E3 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim47Q8C0E3 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim47Q8C0E3 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC18.41■□□□□ 0.54
Trim47Q8C0E3 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Trim47Q8C0E3 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim47Q8C0E3 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim47Q8C0E3 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Trim47Q8C0E3 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
Trim47Q8C0E3 Otx2os1-206ENSMUST00000228153 787 ntBASIC18.41■□□□□ 0.54
Trim47Q8C0E3 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim47Q8C0E3 Gm36858-201ENSMUST00000194501 2391 ntBASIC18.41■□□□□ 0.54
Trim47Q8C0E3 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim47Q8C0E3 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim47Q8C0E3 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC18.41■□□□□ 0.54
Trim47Q8C0E3 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim47Q8C0E3 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Trim47Q8C0E3 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Trim47Q8C0E3 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC18.4■□□□□ 0.54
Trim47Q8C0E3 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim47Q8C0E3 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trim47Q8C0E3 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim47Q8C0E3 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim47Q8C0E3 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Trim47Q8C0E3 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim47Q8C0E3 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim47Q8C0E3 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim47Q8C0E3 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim47Q8C0E3 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trim47Q8C0E3 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim47Q8C0E3 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim47Q8C0E3 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim47Q8C0E3 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trim47Q8C0E3 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim47Q8C0E3 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim47Q8C0E3 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trim47Q8C0E3 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim47Q8C0E3 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trim47Q8C0E3 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Trim47Q8C0E3 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Trim47Q8C0E3 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Trim47Q8C0E3 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim47Q8C0E3 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim47Q8C0E3 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Trim47Q8C0E3 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Trim47Q8C0E3 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim47Q8C0E3 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC18.39■□□□□ 0.53
Trim47Q8C0E3 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim47Q8C0E3 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim47Q8C0E3 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim47Q8C0E3 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim47Q8C0E3 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim47Q8C0E3 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim47Q8C0E3 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim47Q8C0E3 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim47Q8C0E3 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Trim47Q8C0E3 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim47Q8C0E3 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim47Q8C0E3 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim47Q8C0E3 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim47Q8C0E3 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Trim47Q8C0E3 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim47Q8C0E3 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim47Q8C0E3 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim47Q8C0E3 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim47Q8C0E3 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trim47Q8C0E3 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Trim47Q8C0E3 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim47Q8C0E3 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim47Q8C0E3 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC18.37■□□□□ 0.53
Trim47Q8C0E3 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms