Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC22.77■■□□□ 1.24
Usp40Q8BWR4 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC22.77■■□□□ 1.24
Usp40Q8BWR4 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Usp40Q8BWR4 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Usp40Q8BWR4 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Usp40Q8BWR4 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Usp40Q8BWR4 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Usp40Q8BWR4 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Usp40Q8BWR4 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Usp40Q8BWR4 Gm1818-201ENSMUST00000169406 1184 ntBASIC22.76■■□□□ 1.23
Usp40Q8BWR4 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC22.76■■□□□ 1.23
Usp40Q8BWR4 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC22.76■■□□□ 1.23
Usp40Q8BWR4 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Usp40Q8BWR4 Rps4l-201ENSMUST00000071745 943 ntBASIC22.76■■□□□ 1.23
Usp40Q8BWR4 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Usp40Q8BWR4 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC22.76■■□□□ 1.23
Usp40Q8BWR4 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Usp40Q8BWR4 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Usp40Q8BWR4 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Usp40Q8BWR4 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC22.76■■□□□ 1.23
Usp40Q8BWR4 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Usp40Q8BWR4 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
Usp40Q8BWR4 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
Usp40Q8BWR4 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC22.75■■□□□ 1.23
Usp40Q8BWR4 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Usp40Q8BWR4 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC22.75■■□□□ 1.23
Usp40Q8BWR4 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC22.75■■□□□ 1.23
Usp40Q8BWR4 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Usp40Q8BWR4 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
Usp40Q8BWR4 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Usp40Q8BWR4 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC22.75■■□□□ 1.23
Usp40Q8BWR4 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC22.75■■□□□ 1.23
Usp40Q8BWR4 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Usp40Q8BWR4 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Usp40Q8BWR4 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC22.75■■□□□ 1.23
Usp40Q8BWR4 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Usp40Q8BWR4 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC22.75■■□□□ 1.23
Usp40Q8BWR4 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Usp40Q8BWR4 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
Usp40Q8BWR4 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Usp40Q8BWR4 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
Usp40Q8BWR4 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC22.74■■□□□ 1.23
Usp40Q8BWR4 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC22.74■■□□□ 1.23
Usp40Q8BWR4 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
Usp40Q8BWR4 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Usp40Q8BWR4 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Usp40Q8BWR4 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Usp40Q8BWR4 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC22.74■■□□□ 1.23
Usp40Q8BWR4 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Usp40Q8BWR4 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Usp40Q8BWR4 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Usp40Q8BWR4 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC22.74■■□□□ 1.23
Usp40Q8BWR4 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
Usp40Q8BWR4 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC22.74■■□□□ 1.23
Usp40Q8BWR4 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC22.73■■□□□ 1.23
Usp40Q8BWR4 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Usp40Q8BWR4 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC22.73■■□□□ 1.23
Usp40Q8BWR4 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC22.73■■□□□ 1.23
Usp40Q8BWR4 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Usp40Q8BWR4 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Usp40Q8BWR4 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
Usp40Q8BWR4 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Usp40Q8BWR4 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Usp40Q8BWR4 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Usp40Q8BWR4 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
Usp40Q8BWR4 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Usp40Q8BWR4 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
Usp40Q8BWR4 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC22.72■■□□□ 1.23
Usp40Q8BWR4 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Usp40Q8BWR4 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC22.72■■□□□ 1.23
Usp40Q8BWR4 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Usp40Q8BWR4 Gm13830-205ENSMUST00000201195 1155 ntBASIC22.72■■□□□ 1.23
Usp40Q8BWR4 AW822252-206ENSMUST00000208904 237 ntBASIC22.72■■□□□ 1.23
Usp40Q8BWR4 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC22.72■■□□□ 1.23
Usp40Q8BWR4 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Usp40Q8BWR4 Gm43702-201ENSMUST00000198772 2546 ntBASIC22.72■■□□□ 1.23
Usp40Q8BWR4 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Usp40Q8BWR4 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Usp40Q8BWR4 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Usp40Q8BWR4 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC22.72■■□□□ 1.23
Usp40Q8BWR4 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC22.71■■□□□ 1.23
Usp40Q8BWR4 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
Usp40Q8BWR4 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC22.71■■□□□ 1.23
Usp40Q8BWR4 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Usp40Q8BWR4 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC22.71■■□□□ 1.23
Usp40Q8BWR4 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Usp40Q8BWR4 Gm6443-201ENSMUST00000203599 874 ntBASIC22.71■■□□□ 1.23
Usp40Q8BWR4 AC161829.1-201ENSMUST00000220298 281 ntBASIC22.71■■□□□ 1.23
Usp40Q8BWR4 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Usp40Q8BWR4 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Usp40Q8BWR4 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
Usp40Q8BWR4 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Usp40Q8BWR4 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Usp40Q8BWR4 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
Usp40Q8BWR4 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
Usp40Q8BWR4 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
Usp40Q8BWR4 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Usp40Q8BWR4 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC22.71■■□□□ 1.23
Usp40Q8BWR4 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Usp40Q8BWR4 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC22.71■■□□□ 1.23
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms