Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim56Q80VI1 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim56Q80VI1 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim56Q80VI1 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trim56Q80VI1 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim56Q80VI1 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Trim56Q80VI1 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Trim56Q80VI1 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Trim56Q80VI1 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim56Q80VI1 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim56Q80VI1 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC19.62■□□□□ 0.73
Trim56Q80VI1 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Trim56Q80VI1 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Trim56Q80VI1 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim56Q80VI1 Gm15442-201ENSMUST00000117905 1527 ntBASIC19.61■□□□□ 0.73
Trim56Q80VI1 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Trim56Q80VI1 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim56Q80VI1 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Trim56Q80VI1 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim56Q80VI1 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim56Q80VI1 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Trim56Q80VI1 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Trim56Q80VI1 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim56Q80VI1 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trim56Q80VI1 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim56Q80VI1 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim56Q80VI1 Gm15794-201ENSMUST00000120182 631 ntBASIC19.61■□□□□ 0.73
Trim56Q80VI1 Gm10459-201ENSMUST00000202708 1155 ntBASIC19.61■□□□□ 0.73
Trim56Q80VI1 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC19.61■□□□□ 0.73
Trim56Q80VI1 AC130713.1-201ENSMUST00000228853 1096 ntBASIC19.61■□□□□ 0.73
Trim56Q80VI1 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trim56Q80VI1 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim56Q80VI1 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim56Q80VI1 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim56Q80VI1 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Trim56Q80VI1 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC19.61■□□□□ 0.73
Trim56Q80VI1 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim56Q80VI1 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim56Q80VI1 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim56Q80VI1 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim56Q80VI1 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim56Q80VI1 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim56Q80VI1 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim56Q80VI1 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC19.6■□□□□ 0.73
Trim56Q80VI1 Olfr129-201ENSMUST00000122318 993 ntBASIC19.6■□□□□ 0.73
Trim56Q80VI1 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim56Q80VI1 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim56Q80VI1 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim56Q80VI1 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim56Q80VI1 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim56Q80VI1 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim56Q80VI1 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trim56Q80VI1 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trim56Q80VI1 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Trim56Q80VI1 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim56Q80VI1 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim56Q80VI1 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Trim56Q80VI1 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim56Q80VI1 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim56Q80VI1 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim56Q80VI1 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim56Q80VI1 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim56Q80VI1 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Trim56Q80VI1 Gm45328-201ENSMUST00000210942 917 ntBASIC19.59■□□□□ 0.73
Trim56Q80VI1 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim56Q80VI1 Gm10819-201ENSMUST00000099988 561 ntBASIC19.59■□□□□ 0.73
Trim56Q80VI1 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim56Q80VI1 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Trim56Q80VI1 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC19.59■□□□□ 0.73
Trim56Q80VI1 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trim56Q80VI1 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Trim56Q80VI1 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
Trim56Q80VI1 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC19.58■□□□□ 0.73
Trim56Q80VI1 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Trim56Q80VI1 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trim56Q80VI1 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trim56Q80VI1 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trim56Q80VI1 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trim56Q80VI1 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trim56Q80VI1 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trim56Q80VI1 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Trim56Q80VI1 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC19.58■□□□□ 0.72
Trim56Q80VI1 Gm45774-201ENSMUST00000211992 2665 ntBASIC19.58■□□□□ 0.72
Trim56Q80VI1 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trim56Q80VI1 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Trim56Q80VI1 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim56Q80VI1 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim56Q80VI1 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim56Q80VI1 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim56Q80VI1 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim56Q80VI1 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim56Q80VI1 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim56Q80VI1 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim56Q80VI1 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim56Q80VI1 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Trim56Q80VI1 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim56Q80VI1 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Trim56Q80VI1 Gm13216-201ENSMUST00000117145 591 ntBASIC19.57■□□□□ 0.72
Trim56Q80VI1 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim56Q80VI1 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC19.56■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms