Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 Mir3081-201ENSMUST00000175305 84 ntBASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Otx2os1-206ENSMUST00000228153 787 ntBASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
Hmgb4Q6P8W9 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Hmgb4Q6P8W9 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC17.39■□□□□ 0.37
Hmgb4Q6P8W9 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Hmgb4Q6P8W9 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb4Q6P8W9 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb4Q6P8W9 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Hmgb4Q6P8W9 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb4Q6P8W9 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb4Q6P8W9 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb4Q6P8W9 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb4Q6P8W9 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb4Q6P8W9 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb4Q6P8W9 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb4Q6P8W9 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb4Q6P8W9 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb4Q6P8W9 Gm26917-202ENSMUST00000192833 3329 ntBASIC17.39■□□□□ 0.37
Hmgb4Q6P8W9 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb4Q6P8W9 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb4Q6P8W9 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Gm27742-201ENSMUST00000184667 60 ntBASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 AC122351.1-201ENSMUST00000220467 126 ntBASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb4Q6P8W9 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb4Q6P8W9 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb4Q6P8W9 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb4Q6P8W9 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
Hmgb4Q6P8W9 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC17.37■□□□□ 0.37
Hmgb4Q6P8W9 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
Hmgb4Q6P8W9 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb4Q6P8W9 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Hmgb4Q6P8W9 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb4Q6P8W9 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb4Q6P8W9 Cxcl14-202ENSMUST00000224801 1467 ntBASIC17.37■□□□□ 0.37
Hmgb4Q6P8W9 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb4Q6P8W9 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC17.36■□□□□ 0.37
Hmgb4Q6P8W9 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Hmgb4Q6P8W9 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Hmgb4Q6P8W9 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Hmgb4Q6P8W9 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Hmgb4Q6P8W9 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Hmgb4Q6P8W9 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC17.36■□□□□ 0.37
Hmgb4Q6P8W9 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms