Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Gm37722-201ENSMUST00000193757 208 ntBASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Gm16401-202ENSMUST00000197463 2074 ntBASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
Rtl3Q6P1Y1 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Gm45203-201ENSMUST00000206384 1831 ntBASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Rtl3Q6P1Y1 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Gm11336-201ENSMUST00000118168 334 ntBASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Gm5587-201ENSMUST00000206270 674 ntBASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rtl3Q6P1Y1 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Gm14464-201ENSMUST00000119658 1254 ntBASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Gm9013-201ENSMUST00000132939 882 ntBASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 AC122351.1-201ENSMUST00000220467 126 ntBASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Gm18115-201ENSMUST00000221209 621 ntBASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Rtl3Q6P1Y1 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rtl3Q6P1Y1 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC17.15■□□□□ 0.34
Rtl3Q6P1Y1 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms