Protein–RNA interactions for Protein: Q64347

Clcn1, Chloride channel protein 1, mousemouse

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn1Q64347 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Clcn1Q64347 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Clcn1Q64347 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Clcn1Q64347 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Clcn1Q64347 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Clcn1Q64347 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
Clcn1Q64347 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Clcn1Q64347 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Clcn1Q64347 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC20.98■□□□□ 0.95
Clcn1Q64347 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC20.98■□□□□ 0.95
Clcn1Q64347 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Clcn1Q64347 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC20.98■□□□□ 0.95
Clcn1Q64347 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Clcn1Q64347 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Clcn1Q64347 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Clcn1Q64347 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC20.98■□□□□ 0.95
Clcn1Q64347 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Clcn1Q64347 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
Clcn1Q64347 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Clcn1Q64347 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Clcn1Q64347 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Clcn1Q64347 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Clcn1Q64347 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Clcn1Q64347 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Clcn1Q64347 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Clcn1Q64347 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Clcn1Q64347 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Clcn1Q64347 Gfra2-202ENSMUST00000227633 1480 ntBASIC20.97■□□□□ 0.95
Clcn1Q64347 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Clcn1Q64347 Gm13312-201ENSMUST00000119631 718 ntBASIC20.97■□□□□ 0.95
Clcn1Q64347 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Clcn1Q64347 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Clcn1Q64347 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC20.97■□□□□ 0.95
Clcn1Q64347 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Clcn1Q64347 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Clcn1Q64347 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Clcn1Q64347 AL590614.2-201ENSMUST00000225374 1937 ntBASIC20.97■□□□□ 0.95
Clcn1Q64347 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Clcn1Q64347 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Clcn1Q64347 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
Clcn1Q64347 Zcchc6-207ENSMUST00000225576 2499 ntBASIC20.97■□□□□ 0.95
Clcn1Q64347 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Clcn1Q64347 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Clcn1Q64347 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Clcn1Q64347 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Clcn1Q64347 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Clcn1Q64347 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC20.96■□□□□ 0.95
Clcn1Q64347 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Clcn1Q64347 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Clcn1Q64347 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Clcn1Q64347 Gm5712-201ENSMUST00000199748 1043 ntBASIC20.96■□□□□ 0.95
Clcn1Q64347 Gm9449-201ENSMUST00000207265 1011 ntBASIC20.96■□□□□ 0.95
Clcn1Q64347 Gm18195-201ENSMUST00000207604 706 ntBASIC20.96■□□□□ 0.95
Clcn1Q64347 Gm6376-201ENSMUST00000209407 580 ntBASIC20.96■□□□□ 0.95
Clcn1Q64347 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Clcn1Q64347 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC20.96■□□□□ 0.95
Clcn1Q64347 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Clcn1Q64347 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Clcn1Q64347 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Clcn1Q64347 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Clcn1Q64347 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Clcn1Q64347 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Clcn1Q64347 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Clcn1Q64347 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Clcn1Q64347 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Clcn1Q64347 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Clcn1Q64347 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Clcn1Q64347 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC20.95■□□□□ 0.94
Clcn1Q64347 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Clcn1Q64347 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Clcn1Q64347 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Clcn1Q64347 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Clcn1Q64347 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Clcn1Q64347 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Clcn1Q64347 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Clcn1Q64347 Gm7862-201ENSMUST00000121461 292 ntBASIC20.95■□□□□ 0.94
Clcn1Q64347 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Clcn1Q64347 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Clcn1Q64347 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Clcn1Q64347 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC20.95■□□□□ 0.94
Clcn1Q64347 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC20.95■□□□□ 0.94
Clcn1Q64347 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Clcn1Q64347 Rps4l-201ENSMUST00000071745 943 ntBASIC20.95■□□□□ 0.94
Clcn1Q64347 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Clcn1Q64347 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Clcn1Q64347 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Clcn1Q64347 Tfap2a-209ENSMUST00000225180 1828 ntBASIC20.94■□□□□ 0.94
Clcn1Q64347 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Clcn1Q64347 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Clcn1Q64347 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Clcn1Q64347 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Clcn1Q64347 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Clcn1Q64347 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Clcn1Q64347 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Clcn1Q64347 Gm43808-201ENSMUST00000202534 2065 ntBASIC20.94■□□□□ 0.94
Clcn1Q64347 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Clcn1Q64347 Mir5131-201ENSMUST00000175426 93 ntBASIC20.94■□□□□ 0.94
Clcn1Q64347 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Clcn1Q64347 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Clcn1Q64347 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms