Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vps54Q5SPW0 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
Vps54Q5SPW0 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Vps54Q5SPW0 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Vps54Q5SPW0 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vps54Q5SPW0 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Vps54Q5SPW0 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps54Q5SPW0 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC19.97■□□□□ 0.79
Vps54Q5SPW0 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps54Q5SPW0 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps54Q5SPW0 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps54Q5SPW0 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Vps54Q5SPW0 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps54Q5SPW0 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Vps54Q5SPW0 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Vps54Q5SPW0 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Vps54Q5SPW0 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps54Q5SPW0 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps54Q5SPW0 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps54Q5SPW0 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps54Q5SPW0 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps54Q5SPW0 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps54Q5SPW0 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Vps54Q5SPW0 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC19.97■□□□□ 0.79
Vps54Q5SPW0 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps54Q5SPW0 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps54Q5SPW0 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Vps54Q5SPW0 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vps54Q5SPW0 Slc35b2-202ENSMUST00000223987 1766 ntBASIC19.96■□□□□ 0.79
Vps54Q5SPW0 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vps54Q5SPW0 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vps54Q5SPW0 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Vps54Q5SPW0 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vps54Q5SPW0 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vps54Q5SPW0 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vps54Q5SPW0 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps54Q5SPW0 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps54Q5SPW0 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC19.95■□□□□ 0.78
Vps54Q5SPW0 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps54Q5SPW0 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps54Q5SPW0 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps54Q5SPW0 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Vps54Q5SPW0 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Vps54Q5SPW0 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Vps54Q5SPW0 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps54Q5SPW0 Gm14859-201ENSMUST00000117752 357 ntBASIC19.95■□□□□ 0.78
Vps54Q5SPW0 AC130713.1-201ENSMUST00000228853 1096 ntBASIC19.95■□□□□ 0.78
Vps54Q5SPW0 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps54Q5SPW0 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps54Q5SPW0 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps54Q5SPW0 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps54Q5SPW0 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Vps54Q5SPW0 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps54Q5SPW0 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps54Q5SPW0 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps54Q5SPW0 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Vps54Q5SPW0 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps54Q5SPW0 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps54Q5SPW0 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Vps54Q5SPW0 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Vps54Q5SPW0 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Vps54Q5SPW0 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps54Q5SPW0 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps54Q5SPW0 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps54Q5SPW0 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps54Q5SPW0 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps54Q5SPW0 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps54Q5SPW0 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps54Q5SPW0 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps54Q5SPW0 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Vps54Q5SPW0 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps54Q5SPW0 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Vps54Q5SPW0 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC19.93■□□□□ 0.78
Vps54Q5SPW0 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps54Q5SPW0 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Vps54Q5SPW0 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
Vps54Q5SPW0 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps54Q5SPW0 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps54Q5SPW0 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Vps54Q5SPW0 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC19.93■□□□□ 0.78
Vps54Q5SPW0 Gm15794-201ENSMUST00000120182 631 ntBASIC19.93■□□□□ 0.78
Vps54Q5SPW0 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Vps54Q5SPW0 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps54Q5SPW0 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps54Q5SPW0 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps54Q5SPW0 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps54Q5SPW0 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps54Q5SPW0 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC19.93■□□□□ 0.78
Vps54Q5SPW0 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps54Q5SPW0 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps54Q5SPW0 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Vps54Q5SPW0 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Vps54Q5SPW0 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Vps54Q5SPW0 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Vps54Q5SPW0 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Vps54Q5SPW0 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Vps54Q5SPW0 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Vps54Q5SPW0 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Vps54Q5SPW0 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Vps54Q5SPW0 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms