Protein–RNA interactions for Protein: Q4VGL6

Rc3h1, Roquin-1, mousemouse

Known RBP Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rc3h1Q4VGL6 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rc3h1Q4VGL6 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rc3h1Q4VGL6 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rc3h1Q4VGL6 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Rc3h1Q4VGL6 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rc3h1Q4VGL6 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Rc3h1Q4VGL6 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Gm24589-201ENSMUST00000116692 94 ntBASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Gm7153-201ENSMUST00000117092 455 ntBASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Gm12895-201ENSMUST00000122214 226 ntBASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Gm11841-201ENSMUST00000117060 1963 ntBASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rc3h1Q4VGL6 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rc3h1Q4VGL6 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rc3h1Q4VGL6 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC19.17■□□□□ 0.66
Rc3h1Q4VGL6 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Rc3h1Q4VGL6 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC19.17■□□□□ 0.66
Rc3h1Q4VGL6 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC19.17■□□□□ 0.66
Rc3h1Q4VGL6 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Rc3h1Q4VGL6 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rc3h1Q4VGL6 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rc3h1Q4VGL6 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rc3h1Q4VGL6 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rc3h1Q4VGL6 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rc3h1Q4VGL6 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Rc3h1Q4VGL6 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rc3h1Q4VGL6 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Rc3h1Q4VGL6 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rc3h1Q4VGL6 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Rc3h1Q4VGL6 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rc3h1Q4VGL6 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rc3h1Q4VGL6 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
Rc3h1Q4VGL6 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rc3h1Q4VGL6 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC19.16■□□□□ 0.66
Rc3h1Q4VGL6 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC19.16■□□□□ 0.66
Rc3h1Q4VGL6 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Rc3h1Q4VGL6 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Rc3h1Q4VGL6 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
Rc3h1Q4VGL6 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Rc3h1Q4VGL6 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rc3h1Q4VGL6 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC19.16■□□□□ 0.66
Rc3h1Q4VGL6 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rc3h1Q4VGL6 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC19.16■□□□□ 0.66
Rc3h1Q4VGL6 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Rc3h1Q4VGL6 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
Rc3h1Q4VGL6 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
Rc3h1Q4VGL6 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC19.16■□□□□ 0.66
Rc3h1Q4VGL6 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rc3h1Q4VGL6 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rc3h1Q4VGL6 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Rc3h1Q4VGL6 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rc3h1Q4VGL6 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rc3h1Q4VGL6 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Rc3h1Q4VGL6 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
Rc3h1Q4VGL6 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rc3h1Q4VGL6 AC153794.1-201ENSMUST00000169148 126 ntBASIC19.15■□□□□ 0.66
Rc3h1Q4VGL6 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC19.15■□□□□ 0.66
Rc3h1Q4VGL6 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rc3h1Q4VGL6 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rc3h1Q4VGL6 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rc3h1Q4VGL6 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
Rc3h1Q4VGL6 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rc3h1Q4VGL6 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rc3h1Q4VGL6 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Rc3h1Q4VGL6 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rc3h1Q4VGL6 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rc3h1Q4VGL6 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Rc3h1Q4VGL6 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rc3h1Q4VGL6 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rc3h1Q4VGL6 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Rc3h1Q4VGL6 Gm10052-201ENSMUST00000168019 960 ntBASIC19.14■□□□□ 0.65
Rc3h1Q4VGL6 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC19.14■□□□□ 0.65
Rc3h1Q4VGL6 Gm7729-201ENSMUST00000050143 801 ntBASIC19.14■□□□□ 0.65
Rc3h1Q4VGL6 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rc3h1Q4VGL6 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Rc3h1Q4VGL6 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Rc3h1Q4VGL6 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Rc3h1Q4VGL6 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rc3h1Q4VGL6 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC19.13■□□□□ 0.65
Rc3h1Q4VGL6 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Rc3h1Q4VGL6 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Rc3h1Q4VGL6 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rc3h1Q4VGL6 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rc3h1Q4VGL6 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC19.13■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms