Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Gm5712-201ENSMUST00000199748 1043 ntBASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 AC138767.1-201ENSMUST00000222661 415 ntBASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3aQ3ULJ3 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3aQ3ULJ3 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3aQ3ULJ3 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
Upf3aQ3ULJ3 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3aQ3ULJ3 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3aQ3ULJ3 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3aQ3ULJ3 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3aQ3ULJ3 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3aQ3ULJ3 Vti1a-206ENSMUST00000225529 1244 ntBASIC17.45■□□□□ 0.38
Upf3aQ3ULJ3 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3aQ3ULJ3 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3aQ3ULJ3 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3aQ3ULJ3 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3aQ3ULJ3 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3aQ3ULJ3 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3aQ3ULJ3 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Upf3aQ3ULJ3 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3aQ3ULJ3 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 Gm18856-201ENSMUST00000178096 1374 ntBASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 Mir5131-201ENSMUST00000175426 93 ntBASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 AC107711.5-202ENSMUST00000226429 702 ntBASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 Gm42900-201ENSMUST00000197184 2167 ntBASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3aQ3ULJ3 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Gm1401-201ENSMUST00000122048 772 ntBASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Gm10060-201ENSMUST00000212002 111 ntBASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 CT009713.7-201ENSMUST00000224689 571 ntBASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Upf3aQ3ULJ3 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3aQ3ULJ3 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms