Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Limch1Q3UH68 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Limch1Q3UH68 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Limch1Q3UH68 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Limch1Q3UH68 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Limch1Q3UH68 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Limch1Q3UH68 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Limch1Q3UH68 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Limch1Q3UH68 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Limch1Q3UH68 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Limch1Q3UH68 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Limch1Q3UH68 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC19.56■□□□□ 0.72
Limch1Q3UH68 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Limch1Q3UH68 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Limch1Q3UH68 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
Limch1Q3UH68 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Limch1Q3UH68 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Limch1Q3UH68 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Limch1Q3UH68 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Limch1Q3UH68 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Limch1Q3UH68 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Limch1Q3UH68 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Limch1Q3UH68 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Limch1Q3UH68 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Limch1Q3UH68 Gm13474-201ENSMUST00000122466 815 ntBASIC19.55■□□□□ 0.72
Limch1Q3UH68 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Limch1Q3UH68 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC19.55■□□□□ 0.72
Limch1Q3UH68 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Limch1Q3UH68 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Limch1Q3UH68 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Limch1Q3UH68 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Limch1Q3UH68 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Limch1Q3UH68 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Limch1Q3UH68 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Limch1Q3UH68 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Limch1Q3UH68 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Limch1Q3UH68 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Limch1Q3UH68 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Limch1Q3UH68 Gm18958-201ENSMUST00000174258 762 ntBASIC19.54■□□□□ 0.72
Limch1Q3UH68 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC19.54■□□□□ 0.72
Limch1Q3UH68 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Limch1Q3UH68 Ank2-226ENSMUST00000189368 339 ntBASIC19.54■□□□□ 0.72
Limch1Q3UH68 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Limch1Q3UH68 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Limch1Q3UH68 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Limch1Q3UH68 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Limch1Q3UH68 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Limch1Q3UH68 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Limch1Q3UH68 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Limch1Q3UH68 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Gm9103-201ENSMUST00000119371 405 ntBASIC19.53■□□□□ 0.72
Limch1Q3UH68 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Limch1Q3UH68 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Limch1Q3UH68 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Limch1Q3UH68 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Limch1Q3UH68 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Limch1Q3UH68 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Limch1Q3UH68 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Limch1Q3UH68 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Limch1Q3UH68 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Limch1Q3UH68 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
Limch1Q3UH68 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Limch1Q3UH68 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
Limch1Q3UH68 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC19.52■□□□□ 0.72
Limch1Q3UH68 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Limch1Q3UH68 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Limch1Q3UH68 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Limch1Q3UH68 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Limch1Q3UH68 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Limch1Q3UH68 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Limch1Q3UH68 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
Limch1Q3UH68 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Limch1Q3UH68 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
Limch1Q3UH68 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Limch1Q3UH68 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Limch1Q3UH68 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Limch1Q3UH68 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Limch1Q3UH68 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Limch1Q3UH68 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Limch1Q3UH68 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms