Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 Gm7638-201ENSMUST00000121348 967 ntBASIC15.9■□□□□ 0.14
Sox3P53784 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 Gm43073-201ENSMUST00000198200 1189 ntBASIC15.9■□□□□ 0.14
Sox3P53784 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
Sox3P53784 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
Sox3P53784 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Sox3P53784 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC15.9■□□□□ 0.14
Sox3P53784 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
Sox3P53784 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Sox3P53784 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sox3P53784 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Sox3P53784 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Sox3P53784 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Sox3P53784 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC15.89■□□□□ 0.13
Sox3P53784 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Sox3P53784 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Sox3P53784 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Sox3P53784 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC15.89■□□□□ 0.13
Sox3P53784 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
Sox3P53784 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Sox3P53784 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC15.89■□□□□ 0.13
Sox3P53784 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Sox3P53784 Gm13884-201ENSMUST00000118103 829 ntBASIC15.89■□□□□ 0.13
Sox3P53784 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC15.89■□□□□ 0.13
Sox3P53784 Mir8098-201ENSMUST00000184011 137 ntBASIC15.89■□□□□ 0.13
Sox3P53784 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC15.89■□□□□ 0.13
Sox3P53784 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Sox3P53784 Gm5712-201ENSMUST00000199748 1043 ntBASIC15.89■□□□□ 0.13
Sox3P53784 AC132104.2-201ENSMUST00000215011 266 ntBASIC15.89■□□□□ 0.13
Sox3P53784 Gm7213-201ENSMUST00000215977 950 ntBASIC15.89■□□□□ 0.13
Sox3P53784 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Sox3P53784 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Sox3P53784 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Sox3P53784 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Sox3P53784 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Sox3P53784 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Sox3P53784 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Sox3P53784 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Sox3P53784 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Sox3P53784 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Sox3P53784 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Sox3P53784 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Sox3P53784 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Sox3P53784 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC15.88■□□□□ 0.13
Sox3P53784 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Sox3P53784 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
Sox3P53784 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Sox3P53784 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Sox3P53784 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
Sox3P53784 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
Sox3P53784 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Sox3P53784 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
Sox3P53784 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Sox3P53784 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Sox3P53784 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Sox3P53784 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
Sox3P53784 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Sox3P53784 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Sox3P53784 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Sox3P53784 Gm27459-201ENSMUST00000184860 107 ntBASIC15.87■□□□□ 0.13
Sox3P53784 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Sox3P53784 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Sox3P53784 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Sox3P53784 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Sox3P53784 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC15.87■□□□□ 0.13
Sox3P53784 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Sox3P53784 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Sox3P53784 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Sox3P53784 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC15.86■□□□□ 0.13
Sox3P53784 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Sox3P53784 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Sox3P53784 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
Sox3P53784 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC15.86■□□□□ 0.13
Sox3P53784 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC15.86■□□□□ 0.13
Sox3P53784 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Sox3P53784 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Sox3P53784 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Sox3P53784 Gm27525-201ENSMUST00000184465 107 ntBASIC15.86■□□□□ 0.13
Sox3P53784 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
Sox3P53784 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC15.86■□□□□ 0.13
Sox3P53784 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms