Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
RaraP11416 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RaraP11416 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC17.99■□□□□ 0.47
RaraP11416 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
RaraP11416 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
RaraP11416 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
RaraP11416 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
RaraP11416 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
RaraP11416 Gm715-201ENSMUST00000117865 831 ntBASIC17.99■□□□□ 0.47
RaraP11416 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
RaraP11416 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC17.99■□□□□ 0.47
RaraP11416 Gm3375-201ENSMUST00000203929 796 ntBASIC17.99■□□□□ 0.47
RaraP11416 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
RaraP11416 AC154855.1-201ENSMUST00000227353 1458 ntBASIC17.99■□□□□ 0.47
RaraP11416 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
RaraP11416 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
RaraP11416 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RaraP11416 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
RaraP11416 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
RaraP11416 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RaraP11416 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RaraP11416 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RaraP11416 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC17.98■□□□□ 0.47
RaraP11416 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RaraP11416 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RaraP11416 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
RaraP11416 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
RaraP11416 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RaraP11416 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RaraP11416 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
RaraP11416 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RaraP11416 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
RaraP11416 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RaraP11416 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RaraP11416 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RaraP11416 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RaraP11416 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
RaraP11416 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RaraP11416 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RaraP11416 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
RaraP11416 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC17.97■□□□□ 0.47
RaraP11416 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
RaraP11416 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RaraP11416 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC17.97■□□□□ 0.47
RaraP11416 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RaraP11416 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RaraP11416 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
RaraP11416 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
RaraP11416 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
RaraP11416 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RaraP11416 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RaraP11416 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RaraP11416 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RaraP11416 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
RaraP11416 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC17.96■□□□□ 0.47
RaraP11416 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
RaraP11416 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RaraP11416 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC17.96■□□□□ 0.47
RaraP11416 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
RaraP11416 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RaraP11416 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
RaraP11416 Odf3b-204ENSMUST00000227834 930 ntBASIC17.96■□□□□ 0.47
RaraP11416 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RaraP11416 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
RaraP11416 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC17.96■□□□□ 0.47
RaraP11416 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC17.96■□□□□ 0.47
RaraP11416 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC17.96■□□□□ 0.46
RaraP11416 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
RaraP11416 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.46
RaraP11416 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
RaraP11416 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RaraP11416 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RaraP11416 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RaraP11416 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RaraP11416 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
RaraP11416 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RaraP11416 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RaraP11416 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC17.95■□□□□ 0.46
RaraP11416 Gm8520-201ENSMUST00000186517 868 ntBASIC17.95■□□□□ 0.46
RaraP11416 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RaraP11416 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RaraP11416 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
RaraP11416 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC17.95■□□□□ 0.46
RaraP11416 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
RaraP11416 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RaraP11416 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RaraP11416 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RaraP11416 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RaraP11416 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
RaraP11416 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
RaraP11416 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RaraP11416 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
RaraP11416 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
RaraP11416 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
RaraP11416 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RaraP11416 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
RaraP11416 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
RaraP11416 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RaraP11416 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RaraP11416 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC17.94■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 73.1 ms