Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col3a1P08121 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col3a1P08121 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col3a1P08121 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col3a1P08121 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col3a1P08121 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col3a1P08121 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
Col3a1P08121 Gm11452-201ENSMUST00000122376 690 ntBASIC19.79■□□□□ 0.76
Col3a1P08121 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Col3a1P08121 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Col3a1P08121 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col3a1P08121 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col3a1P08121 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Col3a1P08121 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col3a1P08121 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col3a1P08121 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col3a1P08121 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col3a1P08121 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col3a1P08121 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col3a1P08121 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col3a1P08121 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC19.79■□□□□ 0.76
Col3a1P08121 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC19.79■□□□□ 0.76
Col3a1P08121 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC19.79■□□□□ 0.76
Col3a1P08121 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col3a1P08121 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col3a1P08121 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col3a1P08121 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Col3a1P08121 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Col3a1P08121 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col3a1P08121 Gm7862-201ENSMUST00000121461 292 ntBASIC19.78■□□□□ 0.76
Col3a1P08121 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
Col3a1P08121 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC19.78■□□□□ 0.76
Col3a1P08121 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Col3a1P08121 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col3a1P08121 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col3a1P08121 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col3a1P08121 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col3a1P08121 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col3a1P08121 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Col3a1P08121 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col3a1P08121 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col3a1P08121 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col3a1P08121 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col3a1P08121 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Col3a1P08121 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC19.77■□□□□ 0.76
Col3a1P08121 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Col3a1P08121 Gm18195-201ENSMUST00000207604 706 ntBASIC19.77■□□□□ 0.76
Col3a1P08121 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col3a1P08121 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col3a1P08121 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col3a1P08121 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col3a1P08121 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
Col3a1P08121 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC19.77■□□□□ 0.75
Col3a1P08121 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
Col3a1P08121 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Col3a1P08121 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Col3a1P08121 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col3a1P08121 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC19.76■□□□□ 0.75
Col3a1P08121 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col3a1P08121 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col3a1P08121 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col3a1P08121 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col3a1P08121 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col3a1P08121 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC19.76■□□□□ 0.75
Col3a1P08121 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Col3a1P08121 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC19.76■□□□□ 0.75
Col3a1P08121 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Col3a1P08121 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
Col3a1P08121 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col3a1P08121 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC19.76■□□□□ 0.75
Col3a1P08121 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col3a1P08121 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col3a1P08121 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col3a1P08121 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Col3a1P08121 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col3a1P08121 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col3a1P08121 Gm25406-201ENSMUST00000157599 105 ntBASIC19.75■□□□□ 0.75
Col3a1P08121 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC19.75■□□□□ 0.75
Col3a1P08121 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Col3a1P08121 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col3a1P08121 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col3a1P08121 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col3a1P08121 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Col3a1P08121 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col3a1P08121 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col3a1P08121 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col3a1P08121 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col3a1P08121 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Col3a1P08121 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col3a1P08121 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Col3a1P08121 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
Col3a1P08121 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col3a1P08121 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Col3a1P08121 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col3a1P08121 Gm18733-201ENSMUST00000173950 856 ntBASIC19.74■□□□□ 0.75
Col3a1P08121 Gm25745-201ENSMUST00000174945 133 ntBASIC19.74■□□□□ 0.75
Col3a1P08121 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC19.74■□□□□ 0.75
Col3a1P08121 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC19.74■□□□□ 0.75
Col3a1P08121 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col3a1P08121 Gm6858-201ENSMUST00000208582 1468 ntBASIC19.74■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms