Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sdc4O35988 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sdc4O35988 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Sdc4O35988 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Sdc4O35988 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Sdc4O35988 Gm15794-201ENSMUST00000120182 631 ntBASIC17.13■□□□□ 0.33
Sdc4O35988 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sdc4O35988 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Sdc4O35988 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sdc4O35988 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sdc4O35988 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC17.13■□□□□ 0.33
Sdc4O35988 Gm43338-201ENSMUST00000198617 2223 ntBASIC17.13■□□□□ 0.33
Sdc4O35988 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sdc4O35988 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sdc4O35988 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Sdc4O35988 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Sdc4O35988 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sdc4O35988 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sdc4O35988 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sdc4O35988 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Sdc4O35988 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sdc4O35988 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Sdc4O35988 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sdc4O35988 Olfr129-201ENSMUST00000122318 993 ntBASIC17.12■□□□□ 0.33
Sdc4O35988 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
Sdc4O35988 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Sdc4O35988 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC17.12■□□□□ 0.33
Sdc4O35988 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Sdc4O35988 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sdc4O35988 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sdc4O35988 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Sdc4O35988 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sdc4O35988 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sdc4O35988 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sdc4O35988 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sdc4O35988 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sdc4O35988 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sdc4O35988 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sdc4O35988 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sdc4O35988 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Sdc4O35988 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Sdc4O35988 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC17.11■□□□□ 0.33
Sdc4O35988 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sdc4O35988 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC17.11■□□□□ 0.33
Sdc4O35988 Gm17971-201ENSMUST00000190239 806 ntBASIC17.11■□□□□ 0.33
Sdc4O35988 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sdc4O35988 AC125350.1-201ENSMUST00000225115 903 ntBASIC17.11■□□□□ 0.33
Sdc4O35988 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sdc4O35988 Gm43294-201ENSMUST00000202850 2490 ntBASIC17.11■□□□□ 0.33
Sdc4O35988 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sdc4O35988 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sdc4O35988 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sdc4O35988 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Sdc4O35988 Zkscan4-202ENSMUST00000225845 1506 ntBASIC17.11■□□□□ 0.33
Sdc4O35988 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Sdc4O35988 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Sdc4O35988 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
Sdc4O35988 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sdc4O35988 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sdc4O35988 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC17.1■□□□□ 0.33
Sdc4O35988 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sdc4O35988 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sdc4O35988 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sdc4O35988 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Sdc4O35988 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sdc4O35988 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sdc4O35988 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Sdc4O35988 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Sdc4O35988 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sdc4O35988 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
Sdc4O35988 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Sdc4O35988 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC17.1■□□□□ 0.33
Sdc4O35988 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Sdc4O35988 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Sdc4O35988 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sdc4O35988 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
Sdc4O35988 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC17.1■□□□□ 0.33
Sdc4O35988 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sdc4O35988 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sdc4O35988 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Sdc4O35988 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sdc4O35988 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sdc4O35988 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sdc4O35988 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sdc4O35988 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Sdc4O35988 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC17.1■□□□□ 0.33
Sdc4O35988 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Sdc4O35988 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Sdc4O35988 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Sdc4O35988 Gm15635-204ENSMUST00000208024 2539 ntBASIC17.09■□□□□ 0.33
Sdc4O35988 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Sdc4O35988 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC17.09■□□□□ 0.33
Sdc4O35988 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC17.09■□□□□ 0.33
Sdc4O35988 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC17.09■□□□□ 0.33
Sdc4O35988 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC17.09■□□□□ 0.33
Sdc4O35988 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC17.09■□□□□ 0.33
Sdc4O35988 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
Sdc4O35988 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Sdc4O35988 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sdc4O35988 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms