Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
PKNOX1P55347 AC131971.1-201ENST00000332881 1482 ntBASIC4.31□□□□□ -1.72
PKNOX1P55347 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
PKNOX1P55347 MTND4P26-201ENST00000415971 1359 ntBASIC4.31□□□□□ -1.72
PKNOX1P55347 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.31□□□□□ -1.72
PKNOX1P55347 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
PKNOX1P55347 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
PKNOX1P55347 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.31□□□□□ -1.72
PKNOX1P55347 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.31□□□□□ -1.72
PKNOX1P55347 RN7SKP269-201ENST00000365545 319 ntBASIC4.31□□□□□ -1.72
PKNOX1P55347 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
PKNOX1P55347 AC009302.1-201ENST00000417147 390 ntBASIC4.31□□□□□ -1.72
PKNOX1P55347 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.31□□□□□ -1.72
PKNOX1P55347 NDUFA5P1-201ENST00000433858 341 ntBASIC4.31□□□□□ -1.72
PKNOX1P55347 AC008072.1-201ENST00000434254 824 ntBASIC4.31□□□□□ -1.72
PKNOX1P55347 AC093716.1-201ENST00000435923 377 ntBASIC4.31□□□□□ -1.72
PKNOX1P55347 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC4.31□□□□□ -1.72
PKNOX1P55347 RPS3AP53-201ENST00000454716 778 ntBASIC4.31□□□□□ -1.72
PKNOX1P55347 OR2AF1P-201ENST00000454899 889 ntBASIC4.31□□□□□ -1.72
PKNOX1P55347 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.31□□□□□ -1.72
PKNOX1P55347 EIF2S2P4-201ENST00000461070 984 ntBASIC4.31□□□□□ -1.72
PKNOX1P55347 APOOP2-201ENST00000461561 539 ntBASIC4.31□□□□□ -1.72
PKNOX1P55347 RN7SL329P-201ENST00000467740 299 ntBASIC4.31□□□□□ -1.72
PKNOX1P55347 RN7SL177P-201ENST00000476596 299 ntBASIC4.31□□□□□ -1.72
PKNOX1P55347 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
PKNOX1P55347 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.31□□□□□ -1.72
PKNOX1P55347 AC067904.2-201ENST00000517322 1283 ntBASIC4.31□□□□□ -1.72
PKNOX1P55347 OR5M2P-201ENST00000529003 936 ntBASIC4.31□□□□□ -1.72
PKNOX1P55347 BRD9P1-201ENST00000529855 560 ntBASIC4.31□□□□□ -1.72
PKNOX1P55347 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC4.31□□□□□ -1.72
PKNOX1P55347 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC4.31□□□□□ -1.72
PKNOX1P55347 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.31□□□□□ -1.72
PKNOX1P55347 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.31□□□□□ -1.72
PKNOX1P55347 MTATP6P25-201ENST00000574491 261 ntBASIC4.31□□□□□ -1.72
PKNOX1P55347 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC4.31□□□□□ -1.72
PKNOX1P55347 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC4.31□□□□□ -1.72
PKNOX1P55347 AC034236.3-201ENST00000605999 461 ntBASIC4.31□□□□□ -1.72
PKNOX1P55347 AC006065.6-201ENST00000625201 545 ntBASIC4.31□□□□□ -1.72
PKNOX1P55347 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.31□□□□□ -1.72
PKNOX1P55347 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
PKNOX1P55347 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
PKNOX1P55347 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
PKNOX1P55347 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
PKNOX1P55347 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
PKNOX1P55347 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.3□□□□□ -1.72
PKNOX1P55347 AC011266.1-201ENST00000624119 3569 ntBASIC4.3□□□□□ -1.72
PKNOX1P55347 SNORD74.4-201ENST00000364129 80 ntBASIC4.3□□□□□ -1.72
PKNOX1P55347 HSPD1P16-201ENST00000402302 394 ntBASIC4.3□□□□□ -1.72
PKNOX1P55347 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC4.3□□□□□ -1.72
PKNOX1P55347 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.3□□□□□ -1.72
PKNOX1P55347 AP001324.1-201ENST00000428553 399 ntBASIC4.3□□□□□ -1.72
PKNOX1P55347 AC022022.1-201ENST00000430304 178 ntBASIC4.3□□□□□ -1.72
PKNOX1P55347 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.3□□□□□ -1.72
PKNOX1P55347 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC4.3□□□□□ -1.72
PKNOX1P55347 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.3□□□□□ -1.72
PKNOX1P55347 MTND2P2-201ENST00000434633 945 ntBASIC4.3□□□□□ -1.72
PKNOX1P55347 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.3□□□□□ -1.72
PKNOX1P55347 BUD31P2-201ENST00000449374 300 ntBASIC4.3□□□□□ -1.72
PKNOX1P55347 AL162591.2-201ENST00000449634 317 ntBASIC4.3□□□□□ -1.72
PKNOX1P55347 CALM1P2-201ENST00000452941 448 ntBASIC4.3□□□□□ -1.72
PKNOX1P55347 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.3□□□□□ -1.72
PKNOX1P55347 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.3□□□□□ -1.72
PKNOX1P55347 RPS4XP14-201ENST00000493072 781 ntBASIC4.3□□□□□ -1.72
PKNOX1P55347 PGBD4P4-201ENST00000509673 613 ntBASIC4.3□□□□□ -1.72
PKNOX1P55347 AC006499.6-201ENST00000511169 607 ntBASIC4.3□□□□□ -1.72
PKNOX1P55347 NDUFB4P12-201ENST00000513465 390 ntBASIC4.3□□□□□ -1.72
PKNOX1P55347 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.3□□□□□ -1.72
PKNOX1P55347 MTHFD2P4-201ENST00000515074 1025 ntBASIC4.3□□□□□ -1.72
PKNOX1P55347 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC4.3□□□□□ -1.72
PKNOX1P55347 PHBP17-201ENST00000528576 541 ntBASIC4.3□□□□□ -1.72
PKNOX1P55347 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
PKNOX1P55347 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.3□□□□□ -1.72
PKNOX1P55347 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.3□□□□□ -1.72
PKNOX1P55347 AC092868.3-201ENST00000560515 784 ntBASIC4.3□□□□□ -1.72
PKNOX1P55347 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
PKNOX1P55347 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
PKNOX1P55347 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.3□□□□□ -1.72
PKNOX1P55347 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.3□□□□□ -1.72
PKNOX1P55347 HMGB1P51-201ENST00000605166 638 ntBASIC4.3□□□□□ -1.72
PKNOX1P55347 OR2L1P-202ENST00000641567 1023 ntBASIC4.3□□□□□ -1.72
PKNOX1P55347 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
PKNOX1P55347 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PKNOX1P55347 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.3□□□□□ -1.72
PKNOX1P55347 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
PKNOX1P55347 AL445437.1-201ENST00000623157 3087 ntBASIC4.3□□□□□ -1.72
PKNOX1P55347 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PKNOX1P55347 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.29□□□□□ -1.72
PKNOX1P55347 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
PKNOX1P55347 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PKNOX1P55347 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.29□□□□□ -1.72
PKNOX1P55347 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PKNOX1P55347 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
PKNOX1P55347 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PKNOX1P55347 ASNSP1-201ENST00000518311 1939 ntBASIC4.29□□□□□ -1.72
PKNOX1P55347 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.29□□□□□ -1.72
PKNOX1P55347 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.29□□□□□ -1.72
PKNOX1P55347 RNU6-984P-201ENST00000363236 109 ntBASIC4.29□□□□□ -1.72
PKNOX1P55347 RNU6-152P-201ENST00000384037 107 ntBASIC4.29□□□□□ -1.72
PKNOX1P55347 RNA5SP87-201ENST00000384155 118 ntBASIC4.29□□□□□ -1.72
PKNOX1P55347 MIR105-2-201ENST00000385083 81 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms