Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL121890.2-201ENST00000617644 465 ntBASIC4.32□□□□□ -1.72
SDC1P18827 RPL23AP61-201ENST00000623642 466 ntBASIC4.32□□□□□ -1.72
SDC1P18827 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.32□□□□□ -1.72
SDC1P18827 SDAD1P1-202ENST00000524156 2051 ntBASIC4.32□□□□□ -1.72
SDC1P18827 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.32□□□□□ -1.72
SDC1P18827 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.32□□□□□ -1.72
SDC1P18827 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SDC1P18827 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SDC1P18827 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
SDC1P18827 MAPK10-349ENST00000641767 3661 ntBASIC4.32□□□□□ -1.72
SDC1P18827 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
SDC1P18827 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.31□□□□□ -1.72
SDC1P18827 LINC00622-201ENST00000562811 1570 ntBASIC4.31□□□□□ -1.72
SDC1P18827 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
SDC1P18827 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SDC1P18827 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SDC1P18827 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SDC1P18827 MAPK10-263ENST00000641052 4307 ntBASIC4.31□□□□□ -1.72
SDC1P18827 DDX6P1-205ENST00000441966 1436 ntBASIC4.31□□□□□ -1.72
SDC1P18827 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.31□□□□□ -1.72
SDC1P18827 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.31□□□□□ -1.72
SDC1P18827 CPHL1P-201ENST00000461341 3407 ntBASIC4.31□□□□□ -1.72
SDC1P18827 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SDC1P18827 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
SDC1P18827 AC062016.2-201ENST00000420950 676 ntBASIC4.31□□□□□ -1.72
SDC1P18827 MTND4LP14-201ENST00000429447 288 ntBASIC4.31□□□□□ -1.72
SDC1P18827 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC4.31□□□□□ -1.72
SDC1P18827 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC4.31□□□□□ -1.72
SDC1P18827 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.31□□□□□ -1.72
SDC1P18827 PTMAP6-201ENST00000439110 327 ntBASIC4.31□□□□□ -1.72
SDC1P18827 AC245517.2-201ENST00000442890 346 ntBASIC4.31□□□□□ -1.72
SDC1P18827 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC4.31□□□□□ -1.72
SDC1P18827 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.31□□□□□ -1.72
SDC1P18827 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC4.31□□□□□ -1.72
SDC1P18827 HIGD1AP8-201ENST00000453927 274 ntBASIC4.31□□□□□ -1.72
SDC1P18827 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC4.31□□□□□ -1.72
SDC1P18827 AC110749.1-201ENST00000462007 357 ntBASIC4.31□□□□□ -1.72
SDC1P18827 RPS3AP41-201ENST00000462701 778 ntBASIC4.31□□□□□ -1.72
SDC1P18827 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC4.31□□□□□ -1.72
SDC1P18827 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SDC1P18827 MGST2-204ENST00000506797 634 ntTSL 2 BASIC4.31□□□□□ -1.72
SDC1P18827 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.31□□□□□ -1.72
SDC1P18827 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC4.31□□□□□ -1.72
SDC1P18827 OR5M2P-201ENST00000529003 936 ntBASIC4.31□□□□□ -1.72
SDC1P18827 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
SDC1P18827 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
SDC1P18827 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.31□□□□□ -1.72
SDC1P18827 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC4.31□□□□□ -1.72
SDC1P18827 UBE2FP2-201ENST00000566646 462 ntBASIC4.31□□□□□ -1.72
SDC1P18827 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC4.31□□□□□ -1.72
SDC1P18827 MIR4675-201ENST00000577898 77 ntBASIC4.31□□□□□ -1.72
SDC1P18827 AC091042.1-201ENST00000579213 173 ntBASIC4.31□□□□□ -1.72
SDC1P18827 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.31□□□□□ -1.72
SDC1P18827 AC008759.1-201ENST00000589783 983 ntBASIC4.31□□□□□ -1.72
SDC1P18827 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.31□□□□□ -1.72
SDC1P18827 AC034236.3-201ENST00000605999 461 ntBASIC4.31□□□□□ -1.72
SDC1P18827 MIR7155-201ENST00000615925 56 ntBASIC4.31□□□□□ -1.72
SDC1P18827 AC090510.2-201ENST00000617465 629 ntBASIC4.31□□□□□ -1.72
SDC1P18827 AP001005.3-201ENST00000622049 129 ntBASIC4.31□□□□□ -1.72
SDC1P18827 HPVC1-201ENST00000629899 1198 ntBASIC4.31□□□□□ -1.72
SDC1P18827 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC4.31□□□□□ -1.72
SDC1P18827 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SDC1P18827 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
SDC1P18827 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.31□□□□□ -1.72
SDC1P18827 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
SDC1P18827 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SDC1P18827 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SDC1P18827 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SDC1P18827 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SDC1P18827 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
SDC1P18827 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SDC1P18827 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SDC1P18827 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
SDC1P18827 AL645733.1-201ENST00000402250 217 ntBASIC4.3□□□□□ -1.72
SDC1P18827 AL136131.1-201ENST00000406079 803 ntBASIC4.3□□□□□ -1.72
SDC1P18827 RNA5SP146-201ENST00000410743 123 ntBASIC4.3□□□□□ -1.72
SDC1P18827 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC4.3□□□□□ -1.72
SDC1P18827 RPS26P13-201ENST00000419030 330 ntBASIC4.3□□□□□ -1.72
SDC1P18827 AC008072.1-201ENST00000434254 824 ntBASIC4.3□□□□□ -1.72
SDC1P18827 YWHAZP2-201ENST00000440317 728 ntBASIC4.3□□□□□ -1.72
SDC1P18827 MTCO3P43-201ENST00000440974 771 ntBASIC4.3□□□□□ -1.72
SDC1P18827 AL353898.1-201ENST00000444055 238 ntBASIC4.3□□□□□ -1.72
SDC1P18827 RPL7P61-201ENST00000451721 751 ntBASIC4.3□□□□□ -1.72
SDC1P18827 RPS3AP53-201ENST00000454716 778 ntBASIC4.3□□□□□ -1.72
SDC1P18827 AC074386.1-201ENST00000476560 767 ntBASIC4.3□□□□□ -1.72
SDC1P18827 AC011005.3-201ENST00000491624 395 ntBASIC4.3□□□□□ -1.72
SDC1P18827 AC008897.1-201ENST00000494006 347 ntBASIC4.3□□□□□ -1.72
SDC1P18827 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4.3□□□□□ -1.72
SDC1P18827 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.3□□□□□ -1.72
SDC1P18827 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC4.3□□□□□ -1.72
SDC1P18827 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.3□□□□□ -1.72
SDC1P18827 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.3□□□□□ -1.72
SDC1P18827 AC093770.1-201ENST00000511559 571 ntBASIC4.3□□□□□ -1.72
SDC1P18827 RNA5SP360-201ENST00000516555 118 ntBASIC4.3□□□□□ -1.72
SDC1P18827 SCARNA21.2-201ENST00000516600 166 ntBASIC4.3□□□□□ -1.72
SDC1P18827 AC087272.1-201ENST00000523624 533 ntBASIC4.3□□□□□ -1.72
SDC1P18827 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC4.3□□□□□ -1.72
SDC1P18827 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC4.3□□□□□ -1.72
SDC1P18827 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC4.3□□□□□ -1.72
SDC1P18827 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms