Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Prpf40aQ9R1C7 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Prpf40aQ9R1C7 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Prpf40aQ9R1C7 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Prpf40aQ9R1C7 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Prpf40aQ9R1C7 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Prpf40aQ9R1C7 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Prpf40aQ9R1C7 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Prpf40aQ9R1C7 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Prpf40aQ9R1C7 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Prpf40aQ9R1C7 Gm6433-201ENSMUST00000118634 875 ntBASIC18.34■□□□□ 0.53
Prpf40aQ9R1C7 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC18.34■□□□□ 0.53
Prpf40aQ9R1C7 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC18.34■□□□□ 0.53
Prpf40aQ9R1C7 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC18.34■□□□□ 0.53
Prpf40aQ9R1C7 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC18.34■□□□□ 0.53
Prpf40aQ9R1C7 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Prpf40aQ9R1C7 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Prpf40aQ9R1C7 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Prpf40aQ9R1C7 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Prpf40aQ9R1C7 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Prpf40aQ9R1C7 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Prpf40aQ9R1C7 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC18.33■□□□□ 0.53
Prpf40aQ9R1C7 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC18.33■□□□□ 0.53
Prpf40aQ9R1C7 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Prpf40aQ9R1C7 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Prpf40aQ9R1C7 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Prpf40aQ9R1C7 Gm13474-201ENSMUST00000122466 815 ntBASIC18.33■□□□□ 0.52
Prpf40aQ9R1C7 Gm18958-201ENSMUST00000174258 762 ntBASIC18.33■□□□□ 0.52
Prpf40aQ9R1C7 Krtap5-1-202ENSMUST00000188274 742 ntBASIC18.33■□□□□ 0.52
Prpf40aQ9R1C7 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Prpf40aQ9R1C7 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Prpf40aQ9R1C7 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Prpf40aQ9R1C7 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Prpf40aQ9R1C7 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Prpf40aQ9R1C7 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Prpf40aQ9R1C7 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Prpf40aQ9R1C7 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Prpf40aQ9R1C7 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Prpf40aQ9R1C7 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Gm16061-201ENSMUST00000122167 857 ntBASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 AC153881.2-201ENSMUST00000214877 204 ntBASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Gm8668-201ENSMUST00000120559 1447 ntBASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Prpf40aQ9R1C7 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Prpf40aQ9R1C7 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Prpf40aQ9R1C7 Gm8839-201ENSMUST00000121279 1645 ntBASIC18.31■□□□□ 0.52
Prpf40aQ9R1C7 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Prpf40aQ9R1C7 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Prpf40aQ9R1C7 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Prpf40aQ9R1C7 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Prpf40aQ9R1C7 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Prpf40aQ9R1C7 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Prpf40aQ9R1C7 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC18.31■□□□□ 0.52
Prpf40aQ9R1C7 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Prpf40aQ9R1C7 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Prpf40aQ9R1C7 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Prpf40aQ9R1C7 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Prpf40aQ9R1C7 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Prpf40aQ9R1C7 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Prpf40aQ9R1C7 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Prpf40aQ9R1C7 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Prpf40aQ9R1C7 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Prpf40aQ9R1C7 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Prpf40aQ9R1C7 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Prpf40aQ9R1C7 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Prpf40aQ9R1C7 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Prpf40aQ9R1C7 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC18.3■□□□□ 0.52
Prpf40aQ9R1C7 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC18.3■□□□□ 0.52
Prpf40aQ9R1C7 Gm4217-201ENSMUST00000182243 1002 ntBASIC18.3■□□□□ 0.52
Prpf40aQ9R1C7 Gm7889-201ENSMUST00000185591 958 ntBASIC18.3■□□□□ 0.52
Prpf40aQ9R1C7 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Prpf40aQ9R1C7 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Prpf40aQ9R1C7 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Prpf40aQ9R1C7 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Prpf40aQ9R1C7 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Prpf40aQ9R1C7 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Prpf40aQ9R1C7 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Prpf40aQ9R1C7 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Prpf40aQ9R1C7 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Prpf40aQ9R1C7 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Prpf40aQ9R1C7 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Prpf40aQ9R1C7 Gm28265-201ENSMUST00000188201 2319 ntBASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms