Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Scn11aQ9R053 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Scn11aQ9R053 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Scn11aQ9R053 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Scn11aQ9R053 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Scn11aQ9R053 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Scn11aQ9R053 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Scn11aQ9R053 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Scn11aQ9R053 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC19.72■□□□□ 0.75
Scn11aQ9R053 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC19.72■□□□□ 0.75
Scn11aQ9R053 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
Scn11aQ9R053 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC19.72■□□□□ 0.75
Scn11aQ9R053 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Scn11aQ9R053 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Scn11aQ9R053 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Scn11aQ9R053 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Scn11aQ9R053 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Scn11aQ9R053 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Scn11aQ9R053 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC19.71■□□□□ 0.75
Scn11aQ9R053 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scn11aQ9R053 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scn11aQ9R053 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scn11aQ9R053 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC19.71■□□□□ 0.75
Scn11aQ9R053 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scn11aQ9R053 Gm13216-201ENSMUST00000117145 591 ntBASIC19.71■□□□□ 0.75
Scn11aQ9R053 Gm12497-201ENSMUST00000138778 237 ntBASIC19.71■□□□□ 0.75
Scn11aQ9R053 Gm25406-201ENSMUST00000157599 105 ntBASIC19.71■□□□□ 0.75
Scn11aQ9R053 Gm1818-201ENSMUST00000169406 1184 ntBASIC19.71■□□□□ 0.75
Scn11aQ9R053 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC19.71■□□□□ 0.75
Scn11aQ9R053 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC19.71■□□□□ 0.75
Scn11aQ9R053 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scn11aQ9R053 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scn11aQ9R053 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC19.71■□□□□ 0.75
Scn11aQ9R053 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scn11aQ9R053 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scn11aQ9R053 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Scn11aQ9R053 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Scn11aQ9R053 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC19.7■□□□□ 0.74
Scn11aQ9R053 Gm25745-201ENSMUST00000174945 133 ntBASIC19.7■□□□□ 0.74
Scn11aQ9R053 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Scn11aQ9R053 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC19.7■□□□□ 0.74
Scn11aQ9R053 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC19.7■□□□□ 0.74
Scn11aQ9R053 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Scn11aQ9R053 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Scn11aQ9R053 Gm6598-201ENSMUST00000202719 2615 ntBASIC19.7■□□□□ 0.74
Scn11aQ9R053 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Scn11aQ9R053 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Scn11aQ9R053 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Scn11aQ9R053 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Scn11aQ9R053 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Scn11aQ9R053 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Scn11aQ9R053 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Scn11aQ9R053 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC19.7■□□□□ 0.74
Scn11aQ9R053 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Scn11aQ9R053 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC19.7■□□□□ 0.74
Scn11aQ9R053 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Scn11aQ9R053 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Scn11aQ9R053 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Scn11aQ9R053 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Scn11aQ9R053 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn11aQ9R053 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn11aQ9R053 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn11aQ9R053 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC19.69■□□□□ 0.74
Scn11aQ9R053 Gm43338-201ENSMUST00000198617 2223 ntBASIC19.69■□□□□ 0.74
Scn11aQ9R053 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Scn11aQ9R053 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn11aQ9R053 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Scn11aQ9R053 Gm23935-201ENSMUST00000102303 57 ntBASIC19.69■□□□□ 0.74
Scn11aQ9R053 Gm24270-201ENSMUST00000102326 57 ntBASIC19.69■□□□□ 0.74
Scn11aQ9R053 Gm24245-201ENSMUST00000157318 57 ntBASIC19.69■□□□□ 0.74
Scn11aQ9R053 Gm5264-201ENSMUST00000190584 848 ntBASIC19.69■□□□□ 0.74
Scn11aQ9R053 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn11aQ9R053 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn11aQ9R053 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn11aQ9R053 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn11aQ9R053 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scn11aQ9R053 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scn11aQ9R053 Gm6736-201ENSMUST00000166583 948 ntBASIC19.68■□□□□ 0.74
Scn11aQ9R053 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC19.68■□□□□ 0.74
Scn11aQ9R053 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Scn11aQ9R053 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scn11aQ9R053 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC19.68■□□□□ 0.74
Scn11aQ9R053 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scn11aQ9R053 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC19.68■□□□□ 0.74
Scn11aQ9R053 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scn11aQ9R053 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scn11aQ9R053 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Scn11aQ9R053 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scn11aQ9R053 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scn11aQ9R053 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Scn11aQ9R053 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scn11aQ9R053 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scn11aQ9R053 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scn11aQ9R053 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Scn11aQ9R053 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Scn11aQ9R053 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Scn11aQ9R053 Gm5364-201ENSMUST00000216789 889 ntBASIC19.67■□□□□ 0.74
Scn11aQ9R053 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Scn11aQ9R053 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scn11aQ9R053 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms