Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Nkx2-4Q9EQM3 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Nkx2-4Q9EQM3 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nkx2-4Q9EQM3 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nkx2-4Q9EQM3 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nkx2-4Q9EQM3 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nkx2-4Q9EQM3 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC17.1■□□□□ 0.33
Nkx2-4Q9EQM3 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nkx2-4Q9EQM3 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nkx2-4Q9EQM3 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC17.1■□□□□ 0.33
Nkx2-4Q9EQM3 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Nkx2-4Q9EQM3 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Nkx2-4Q9EQM3 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nkx2-4Q9EQM3 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC17.1■□□□□ 0.33
Nkx2-4Q9EQM3 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nkx2-4Q9EQM3 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Ndufaf2-202ENSMUST00000223734 556 ntBASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 AC154757.1-201ENSMUST00000228289 336 ntBASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC17.09■□□□□ 0.33
Nkx2-4Q9EQM3 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nkx2-4Q9EQM3 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Nkx2-4Q9EQM3 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Nkx2-4Q9EQM3 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nkx2-4Q9EQM3 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nkx2-4Q9EQM3 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC17.08■□□□□ 0.33
Nkx2-4Q9EQM3 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
Nkx2-4Q9EQM3 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nkx2-4Q9EQM3 Gm37500-201ENSMUST00000192059 1443 ntBASIC17.08■□□□□ 0.32
Nkx2-4Q9EQM3 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC17.08■□□□□ 0.32
Nkx2-4Q9EQM3 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
Nkx2-4Q9EQM3 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Nkx2-4Q9EQM3 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nkx2-4Q9EQM3 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC17.08■□□□□ 0.32
Nkx2-4Q9EQM3 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Nkx2-4Q9EQM3 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nkx2-4Q9EQM3 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nkx2-4Q9EQM3 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Nkx2-4Q9EQM3 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Nkx2-4Q9EQM3 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 Gfra2-202ENSMUST00000227633 1480 ntBASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC17.07■□□□□ 0.32
Nkx2-4Q9EQM3 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nkx2-4Q9EQM3 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nkx2-4Q9EQM3 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nkx2-4Q9EQM3 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nkx2-4Q9EQM3 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
Nkx2-4Q9EQM3 Gm8097-201ENSMUST00000117903 829 ntBASIC17.06■□□□□ 0.32
Nkx2-4Q9EQM3 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC17.06■□□□□ 0.32
Nkx2-4Q9EQM3 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
Nkx2-4Q9EQM3 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nkx2-4Q9EQM3 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Nkx2-4Q9EQM3 Gm10175-201ENSMUST00000086013 645 ntBASIC17.06■□□□□ 0.32
Nkx2-4Q9EQM3 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC17.06■□□□□ 0.32
Nkx2-4Q9EQM3 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nkx2-4Q9EQM3 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nkx2-4Q9EQM3 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
Nkx2-4Q9EQM3 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nkx2-4Q9EQM3 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Nkx2-4Q9EQM3 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Nkx2-4Q9EQM3 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC17.06■□□□□ 0.32
Nkx2-4Q9EQM3 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms