Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Gm14859-201ENSMUST00000117752 357 ntBASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Gm9731-201ENSMUST00000209480 747 ntBASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdc40Q9DC48 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Gm43338-201ENSMUST00000198617 2223 ntBASIC15.49■□□□□ 0.07
Cdc40Q9DC48 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdc40Q9DC48 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdc40Q9DC48 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC15.49■□□□□ 0.07
Cdc40Q9DC48 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Cdc40Q9DC48 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdc40Q9DC48 Ddx41-204ENSMUST00000224765 2199 ntBASIC15.49■□□□□ 0.07
Cdc40Q9DC48 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Cdc40Q9DC48 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdc40Q9DC48 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdc40Q9DC48 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC15.49■□□□□ 0.07
Cdc40Q9DC48 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdc40Q9DC48 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdc40Q9DC48 Gm33142-201ENSMUST00000193913 867 ntBASIC15.49■□□□□ 0.07
Cdc40Q9DC48 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdc40Q9DC48 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdc40Q9DC48 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdc40Q9DC48 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC15.49■□□□□ 0.07
Cdc40Q9DC48 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdc40Q9DC48 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Gm45244-201ENSMUST00000211328 2200 ntBASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Gm27389-201ENSMUST00000183622 195 ntBASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cdc40Q9DC48 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Tfap2a-209ENSMUST00000225180 1828 ntBASIC15.47■□□□□ 0.07
Cdc40Q9DC48 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdc40Q9DC48 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Cxcl14-202ENSMUST00000224801 1467 ntBASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cdc40Q9DC48 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms