Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Gm28265-201ENSMUST00000188201 2319 ntBASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Vps28Q9D1C8 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Gm45774-201ENSMUST00000211992 2665 ntBASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Gm6345-202ENSMUST00000180900 204 ntBASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Vps28Q9D1C8 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Vps28Q9D1C8 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Vps28Q9D1C8 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Vps28Q9D1C8 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC17.08■□□□□ 0.33
Vps28Q9D1C8 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Vps28Q9D1C8 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Vps28Q9D1C8 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC17.08■□□□□ 0.32
Vps28Q9D1C8 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Vps28Q9D1C8 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps28Q9D1C8 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Vps28Q9D1C8 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps28Q9D1C8 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Vps28Q9D1C8 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps28Q9D1C8 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps28Q9D1C8 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps28Q9D1C8 Gm9013-201ENSMUST00000132939 882 ntBASIC17.08■□□□□ 0.32
Vps28Q9D1C8 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Vps28Q9D1C8 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps28Q9D1C8 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps28Q9D1C8 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Vps28Q9D1C8 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC17.08■□□□□ 0.32
Vps28Q9D1C8 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Gm8258-201ENSMUST00000055593 1449 ntBASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Gm5587-201ENSMUST00000206270 674 ntBASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms