Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Smc1aQ9CU62 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Smc1aQ9CU62 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Smc1aQ9CU62 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Smc1aQ9CU62 Gm18101-201ENSMUST00000215769 548 ntBASIC18.63■□□□□ 0.57
Smc1aQ9CU62 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
Smc1aQ9CU62 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Smc1aQ9CU62 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Smc1aQ9CU62 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Smc1aQ9CU62 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC18.63■□□□□ 0.57
Smc1aQ9CU62 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Smc1aQ9CU62 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Smc1aQ9CU62 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Smc1aQ9CU62 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Smc1aQ9CU62 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Smc1aQ9CU62 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Smc1aQ9CU62 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC18.62■□□□□ 0.57
Smc1aQ9CU62 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Smc1aQ9CU62 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Smc1aQ9CU62 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Smc1aQ9CU62 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Smc1aQ9CU62 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Smc1aQ9CU62 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Smc1aQ9CU62 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Smc1aQ9CU62 Gm4974-201ENSMUST00000209974 875 ntBASIC18.62■□□□□ 0.57
Smc1aQ9CU62 AC134329.2-201ENSMUST00000217897 428 ntBASIC18.62■□□□□ 0.57
Smc1aQ9CU62 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Smc1aQ9CU62 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Smc1aQ9CU62 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC18.62■□□□□ 0.57
Smc1aQ9CU62 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Smc1aQ9CU62 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Smc1aQ9CU62 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Smc1aQ9CU62 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Smc1aQ9CU62 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Smc1aQ9CU62 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Smc1aQ9CU62 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Smc1aQ9CU62 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Smc1aQ9CU62 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Smc1aQ9CU62 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Smc1aQ9CU62 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
Smc1aQ9CU62 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Smc1aQ9CU62 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Smc1aQ9CU62 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Smc1aQ9CU62 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC18.6■□□□□ 0.57
Smc1aQ9CU62 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Smc1aQ9CU62 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Smc1aQ9CU62 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Smc1aQ9CU62 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Smc1aQ9CU62 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Smc1aQ9CU62 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC18.6■□□□□ 0.57
Smc1aQ9CU62 Gm26596-201ENSMUST00000180464 2655 ntBASIC18.6■□□□□ 0.57
Smc1aQ9CU62 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Smc1aQ9CU62 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC18.6■□□□□ 0.57
Smc1aQ9CU62 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Smc1aQ9CU62 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Smc1aQ9CU62 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Smc1aQ9CU62 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Smc1aQ9CU62 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Smc1aQ9CU62 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
Smc1aQ9CU62 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC18.59■□□□□ 0.57
Smc1aQ9CU62 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Smc1aQ9CU62 Gm22697-201ENSMUST00000175194 63 ntBASIC18.59■□□□□ 0.57
Smc1aQ9CU62 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Smc1aQ9CU62 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Smc1aQ9CU62 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Smc1aQ9CU62 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Smc1aQ9CU62 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Smc1aQ9CU62 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Smc1aQ9CU62 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Smc1aQ9CU62 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Smc1aQ9CU62 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Smc1aQ9CU62 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Smc1aQ9CU62 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Smc1aQ9CU62 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC18.58■□□□□ 0.57
Smc1aQ9CU62 Gm16401-202ENSMUST00000197463 2074 ntBASIC18.58■□□□□ 0.57
Smc1aQ9CU62 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Smc1aQ9CU62 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
Smc1aQ9CU62 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Smc1aQ9CU62 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC18.58■□□□□ 0.56
Smc1aQ9CU62 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms