Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Gm29707-201ENSMUST00000196325 491 ntBASIC17.68■□□□□ 0.42
Sf3b1Q99NB9 Gm44450-201ENSMUST00000199528 114 ntBASIC17.68■□□□□ 0.42
Sf3b1Q99NB9 Zkscan4-202ENSMUST00000225845 1506 ntBASIC17.68■□□□□ 0.42
Sf3b1Q99NB9 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Gm24589-201ENSMUST00000116692 94 ntBASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Gm7461-201ENSMUST00000058918 827 ntBASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sf3b1Q99NB9 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 Gm45244-201ENSMUST00000211328 2200 ntBASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
Sf3b1Q99NB9 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Gm18421-201ENSMUST00000204122 625 ntBASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Sf3b1Q99NB9 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Gm43294-201ENSMUST00000202850 2490 ntBASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sf3b1Q99NB9 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sf3b1Q99NB9 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC17.63■□□□□ 0.41
Sf3b1Q99NB9 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Sf3b1Q99NB9 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sf3b1Q99NB9 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sf3b1Q99NB9 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms