Protein–RNA interactions for Protein: Q8R1T1

Chmp7, Charged multivesicular body protein 7, mousemouse

Predictions only

Length 451 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp7Q8R1T1 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Chmp7Q8R1T1 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC21.31■■□□□ 1
Chmp7Q8R1T1 AW822252-206ENSMUST00000208904 237 ntBASIC21.31■■□□□ 1
Chmp7Q8R1T1 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC21.31■■□□□ 1
Chmp7Q8R1T1 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC21.31■■□□□ 1
Chmp7Q8R1T1 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC21.31■■□□□ 1
Chmp7Q8R1T1 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Chmp7Q8R1T1 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
Chmp7Q8R1T1 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC21.31■■□□□ 1
Chmp7Q8R1T1 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Chmp7Q8R1T1 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Chmp7Q8R1T1 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Chmp7Q8R1T1 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Chmp7Q8R1T1 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Chmp7Q8R1T1 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Chmp7Q8R1T1 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC21.3■■□□□ 1
Chmp7Q8R1T1 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Chmp7Q8R1T1 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Chmp7Q8R1T1 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Chmp7Q8R1T1 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Chmp7Q8R1T1 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC21.3■■□□□ 1
Chmp7Q8R1T1 AC160338.1-201ENSMUST00000214232 705 ntBASIC21.3■■□□□ 1
Chmp7Q8R1T1 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC21.3■■□□□ 1
Chmp7Q8R1T1 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Chmp7Q8R1T1 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Chmp7Q8R1T1 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC21.3■■□□□ 1
Chmp7Q8R1T1 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Chmp7Q8R1T1 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC21.3■■□□□ 1
Chmp7Q8R1T1 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Chmp7Q8R1T1 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Chmp7Q8R1T1 Gm15442-201ENSMUST00000117905 1527 ntBASIC21.29■■□□□ 1
Chmp7Q8R1T1 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Chmp7Q8R1T1 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Chmp7Q8R1T1 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Chmp7Q8R1T1 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Chmp7Q8R1T1 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Chmp7Q8R1T1 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Chmp7Q8R1T1 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Chmp7Q8R1T1 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC21.29■■□□□ 1
Chmp7Q8R1T1 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC21.29■■□□□ 1
Chmp7Q8R1T1 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Chmp7Q8R1T1 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC21.29■■□□□ 1
Chmp7Q8R1T1 AC161829.1-201ENSMUST00000220298 281 ntBASIC21.29■■□□□ 1
Chmp7Q8R1T1 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC21.29■■□□□ 1
Chmp7Q8R1T1 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Chmp7Q8R1T1 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Chmp7Q8R1T1 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Chmp7Q8R1T1 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Chmp7Q8R1T1 Fcho2-208ENSMUST00000224992 2964 ntBASIC21.29■■□□□ 1
Chmp7Q8R1T1 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Chmp7Q8R1T1 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC21.28■■□□□ 1
Chmp7Q8R1T1 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
Chmp7Q8R1T1 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC21.28■■□□□ 1
Chmp7Q8R1T1 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Chmp7Q8R1T1 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Chmp7Q8R1T1 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC21.28■■□□□ 1
Chmp7Q8R1T1 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC21.28■■□□□ 1
Chmp7Q8R1T1 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Chmp7Q8R1T1 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
Chmp7Q8R1T1 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Chmp7Q8R1T1 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC21.27■■□□□ 1
Chmp7Q8R1T1 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Chmp7Q8R1T1 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Chmp7Q8R1T1 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Chmp7Q8R1T1 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC21.27■■□□□ 1
Chmp7Q8R1T1 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC21.27■■□□□ 1
Chmp7Q8R1T1 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Chmp7Q8R1T1 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
Chmp7Q8R1T1 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC21.27■■□□□ 1
Chmp7Q8R1T1 Gm9449-201ENSMUST00000207265 1011 ntBASIC21.27■■□□□ 1
Chmp7Q8R1T1 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Chmp7Q8R1T1 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Chmp7Q8R1T1 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC21.27■■□□□ 1
Chmp7Q8R1T1 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC21.27■■□□□ 1
Chmp7Q8R1T1 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Chmp7Q8R1T1 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC21.27■■□□□ 1
Chmp7Q8R1T1 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Chmp7Q8R1T1 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp7Q8R1T1 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp7Q8R1T1 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Chmp7Q8R1T1 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp7Q8R1T1 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Chmp7Q8R1T1 Gm6376-201ENSMUST00000209407 580 ntBASIC21.26■□□□□ 0.99
Chmp7Q8R1T1 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp7Q8R1T1 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp7Q8R1T1 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp7Q8R1T1 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Chmp7Q8R1T1 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC21.25■□□□□ 0.99
Chmp7Q8R1T1 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chmp7Q8R1T1 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chmp7Q8R1T1 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chmp7Q8R1T1 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chmp7Q8R1T1 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Chmp7Q8R1T1 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC21.25■□□□□ 0.99
Chmp7Q8R1T1 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC21.25■□□□□ 0.99
Chmp7Q8R1T1 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC21.25■□□□□ 0.99
Chmp7Q8R1T1 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Chmp7Q8R1T1 AC107711.5-202ENSMUST00000226429 702 ntBASIC21.25■□□□□ 0.99
Chmp7Q8R1T1 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC21.25■□□□□ 0.99
Chmp7Q8R1T1 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms