Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
Trim27Q62158 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trim27Q62158 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC20.5■□□□□ 0.87
Trim27Q62158 Gm9987-201ENSMUST00000069768 567 ntBASIC20.5■□□□□ 0.87
Trim27Q62158 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim27Q62158 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trim27Q62158 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim27Q62158 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC20.5■□□□□ 0.87
Trim27Q62158 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Trim27Q62158 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim27Q62158 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trim27Q62158 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim27Q62158 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC20.49■□□□□ 0.87
Trim27Q62158 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trim27Q62158 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
Trim27Q62158 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Trim27Q62158 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim27Q62158 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim27Q62158 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim27Q62158 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
Trim27Q62158 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim27Q62158 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Trim27Q62158 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Trim27Q62158 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim27Q62158 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC20.49■□□□□ 0.87
Trim27Q62158 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim27Q62158 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim27Q62158 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trim27Q62158 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim27Q62158 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim27Q62158 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim27Q62158 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC20.48■□□□□ 0.87
Trim27Q62158 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim27Q62158 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC20.48■□□□□ 0.87
Trim27Q62158 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC20.48■□□□□ 0.87
Trim27Q62158 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim27Q62158 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trim27Q62158 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trim27Q62158 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trim27Q62158 Gm18421-201ENSMUST00000204122 625 ntBASIC20.48■□□□□ 0.87
Trim27Q62158 AC134329.2-201ENSMUST00000217897 428 ntBASIC20.48■□□□□ 0.87
Trim27Q62158 Gm18032-201ENSMUST00000222541 538 ntBASIC20.48■□□□□ 0.87
Trim27Q62158 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim27Q62158 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim27Q62158 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim27Q62158 Slc35b2-202ENSMUST00000223987 1766 ntBASIC20.48■□□□□ 0.87
Trim27Q62158 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim27Q62158 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Trim27Q62158 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trim27Q62158 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim27Q62158 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trim27Q62158 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim27Q62158 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim27Q62158 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim27Q62158 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim27Q62158 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Trim27Q62158 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim27Q62158 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
Trim27Q62158 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim27Q62158 Gm11336-201ENSMUST00000118168 334 ntBASIC20.47■□□□□ 0.87
Trim27Q62158 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Trim27Q62158 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim27Q62158 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim27Q62158 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Trim27Q62158 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trim27Q62158 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
Trim27Q62158 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
Trim27Q62158 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim27Q62158 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim27Q62158 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim27Q62158 Gm45412-201ENSMUST00000210217 2275 ntBASIC20.46■□□□□ 0.87
Trim27Q62158 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trim27Q62158 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trim27Q62158 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim27Q62158 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
Trim27Q62158 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim27Q62158 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trim27Q62158 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Trim27Q62158 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim27Q62158 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC20.46■□□□□ 0.87
Trim27Q62158 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim27Q62158 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Trim27Q62158 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim27Q62158 Ddx41-204ENSMUST00000224765 2199 ntBASIC20.46■□□□□ 0.87
Trim27Q62158 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim27Q62158 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim27Q62158 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim27Q62158 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trim27Q62158 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
Trim27Q62158 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Trim27Q62158 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim27Q62158 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Trim27Q62158 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim27Q62158 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Trim27Q62158 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Trim27Q62158 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Trim27Q62158 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Trim27Q62158 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim27Q62158 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim27Q62158 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC20.45■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms