Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col11a1Q61245 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col11a1Q61245 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col11a1Q61245 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col11a1Q61245 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col11a1Q61245 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Col11a1Q61245 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC18.63■□□□□ 0.57
Col11a1Q61245 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col11a1Q61245 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Col11a1Q61245 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col11a1Q61245 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col11a1Q61245 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col11a1Q61245 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col11a1Q61245 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col11a1Q61245 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col11a1Q61245 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col11a1Q61245 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col11a1Q61245 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col11a1Q61245 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col11a1Q61245 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col11a1Q61245 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col11a1Q61245 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col11a1Q61245 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC18.62■□□□□ 0.57
Col11a1Q61245 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col11a1Q61245 Gm11873-201ENSMUST00000117877 1304 ntBASIC18.62■□□□□ 0.57
Col11a1Q61245 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col11a1Q61245 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col11a1Q61245 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col11a1Q61245 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
Col11a1Q61245 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col11a1Q61245 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col11a1Q61245 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col11a1Q61245 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col11a1Q61245 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col11a1Q61245 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col11a1Q61245 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col11a1Q61245 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col11a1Q61245 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col11a1Q61245 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col11a1Q61245 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col11a1Q61245 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col11a1Q61245 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col11a1Q61245 Mir6956-201ENSMUST00000183598 62 ntBASIC18.61■□□□□ 0.57
Col11a1Q61245 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC18.61■□□□□ 0.57
Col11a1Q61245 Gm8655-201ENSMUST00000221159 852 ntBASIC18.61■□□□□ 0.57
Col11a1Q61245 AC117588.1-201ENSMUST00000228510 999 ntBASIC18.61■□□□□ 0.57
Col11a1Q61245 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col11a1Q61245 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col11a1Q61245 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col11a1Q61245 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col11a1Q61245 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col11a1Q61245 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC18.61■□□□□ 0.57
Col11a1Q61245 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col11a1Q61245 Gm13127-201ENSMUST00000118978 1389 ntBASIC18.61■□□□□ 0.57
Col11a1Q61245 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC18.61■□□□□ 0.57
Col11a1Q61245 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col11a1Q61245 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC18.6■□□□□ 0.57
Col11a1Q61245 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Col11a1Q61245 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC18.6■□□□□ 0.57
Col11a1Q61245 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col11a1Q61245 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col11a1Q61245 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col11a1Q61245 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col11a1Q61245 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Col11a1Q61245 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col11a1Q61245 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col11a1Q61245 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col11a1Q61245 Gm15920-201ENSMUST00000118998 402 ntBASIC18.6■□□□□ 0.57
Col11a1Q61245 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col11a1Q61245 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
Col11a1Q61245 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col11a1Q61245 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col11a1Q61245 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col11a1Q61245 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col11a1Q61245 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col11a1Q61245 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Col11a1Q61245 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC18.59■□□□□ 0.57
Col11a1Q61245 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Col11a1Q61245 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col11a1Q61245 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col11a1Q61245 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Col11a1Q61245 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Col11a1Q61245 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC18.59■□□□□ 0.57
Col11a1Q61245 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col11a1Q61245 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC18.59■□□□□ 0.57
Col11a1Q61245 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Col11a1Q61245 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC18.59■□□□□ 0.57
Col11a1Q61245 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col11a1Q61245 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col11a1Q61245 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC18.58■□□□□ 0.57
Col11a1Q61245 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC18.58■□□□□ 0.57
Col11a1Q61245 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Col11a1Q61245 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC18.58■□□□□ 0.57
Col11a1Q61245 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC18.58■□□□□ 0.57
Col11a1Q61245 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col11a1Q61245 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col11a1Q61245 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col11a1Q61245 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col11a1Q61245 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col11a1Q61245 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms