Protein–RNA interactions for Protein: Q5R1B6

Trav8d-2, T cell receptor alpha variable 8D-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-2Q5R1B6 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Trav8d-2Q5R1B6 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav8d-2Q5R1B6 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Trav8d-2Q5R1B6 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav8d-2Q5R1B6 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav8d-2Q5R1B6 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Trav8d-2Q5R1B6 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Trav8d-2Q5R1B6 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav8d-2Q5R1B6 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Trav8d-2Q5R1B6 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav8d-2Q5R1B6 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav8d-2Q5R1B6 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav8d-2Q5R1B6 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav8d-2Q5R1B6 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav8d-2Q5R1B6 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trav8d-2Q5R1B6 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav8d-2Q5R1B6 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav8d-2Q5R1B6 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav8d-2Q5R1B6 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC16.24■□□□□ 0.19
Trav8d-2Q5R1B6 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trav8d-2Q5R1B6 Gm6550-201ENSMUST00000187574 993 ntBASIC16.24■□□□□ 0.19
Trav8d-2Q5R1B6 Gm6089-201ENSMUST00000197666 938 ntBASIC16.24■□□□□ 0.19
Trav8d-2Q5R1B6 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC16.24■□□□□ 0.19
Trav8d-2Q5R1B6 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC16.24■□□□□ 0.19
Trav8d-2Q5R1B6 AC225888.1-201ENSMUST00000227184 728 ntBASIC16.24■□□□□ 0.19
Trav8d-2Q5R1B6 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav8d-2Q5R1B6 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav8d-2Q5R1B6 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav8d-2Q5R1B6 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav8d-2Q5R1B6 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav8d-2Q5R1B6 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Gm37584-201ENSMUST00000193595 1290 ntBASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Gm15442-201ENSMUST00000117905 1527 ntBASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Trav8d-2Q5R1B6 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 Gm9727-201ENSMUST00000161387 555 ntBASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 Gm45683-201ENSMUST00000210825 1247 ntBASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
Trav8d-2Q5R1B6 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav8d-2Q5R1B6 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav8d-2Q5R1B6 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trav8d-2Q5R1B6 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Trav8d-2Q5R1B6 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav8d-2Q5R1B6 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC16.21■□□□□ 0.19
Trav8d-2Q5R1B6 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav8d-2Q5R1B6 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav8d-2Q5R1B6 Gm14822-201ENSMUST00000122247 291 ntBASIC16.21■□□□□ 0.19
Trav8d-2Q5R1B6 Gm12497-201ENSMUST00000138778 237 ntBASIC16.21■□□□□ 0.19
Trav8d-2Q5R1B6 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC16.21■□□□□ 0.19
Trav8d-2Q5R1B6 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC16.21■□□□□ 0.19
Trav8d-2Q5R1B6 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav8d-2Q5R1B6 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav8d-2Q5R1B6 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC16.21■□□□□ 0.19
Trav8d-2Q5R1B6 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav8d-2Q5R1B6 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trav8d-2Q5R1B6 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav8d-2Q5R1B6 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Trav8d-2Q5R1B6 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Trav8d-2Q5R1B6 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav8d-2Q5R1B6 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav8d-2Q5R1B6 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC16.2■□□□□ 0.18
Trav8d-2Q5R1B6 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC16.2■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms