Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Upf3aQ3ULJ3 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Upf3aQ3ULJ3 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Gm27525-201ENSMUST00000184465 107 ntBASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Fam105a-203ENSMUST00000226170 3043 ntBASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Gm45203-201ENSMUST00000206384 1831 ntBASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3aQ3ULJ3 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Gm18206-201ENSMUST00000207027 926 ntBASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Gm15442-201ENSMUST00000117905 1527 ntBASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3aQ3ULJ3 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3aQ3ULJ3 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3aQ3ULJ3 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3aQ3ULJ3 Gm5953-201ENSMUST00000220644 2616 ntBASIC17.49■□□□□ 0.39
Upf3aQ3ULJ3 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
Upf3aQ3ULJ3 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3aQ3ULJ3 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC17.49■□□□□ 0.39
Upf3aQ3ULJ3 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3aQ3ULJ3 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC17.49■□□□□ 0.39
Upf3aQ3ULJ3 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3aQ3ULJ3 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Upf3aQ3ULJ3 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3aQ3ULJ3 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Upf3aQ3ULJ3 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3aQ3ULJ3 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3aQ3ULJ3 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3aQ3ULJ3 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3aQ3ULJ3 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3aQ3ULJ3 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3aQ3ULJ3 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3aQ3ULJ3 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3aQ3ULJ3 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3aQ3ULJ3 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3aQ3ULJ3 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3aQ3ULJ3 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3aQ3ULJ3 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3aQ3ULJ3 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3aQ3ULJ3 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3aQ3ULJ3 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3aQ3ULJ3 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Gm37194-201ENSMUST00000193092 3031 ntBASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3aQ3ULJ3 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms