Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Col17a1Q07563 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC25.72■■□□□ 1.71
Col17a1Q07563 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Col17a1Q07563 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Col17a1Q07563 Gm5628-201ENSMUST00000222318 1049 ntBASIC25.72■■□□□ 1.71
Col17a1Q07563 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Col17a1Q07563 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Col17a1Q07563 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
Col17a1Q07563 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
Col17a1Q07563 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Col17a1Q07563 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Col17a1Q07563 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Col17a1Q07563 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC25.7■■□□□ 1.7
Col17a1Q07563 Gm7774-201ENSMUST00000200064 533 ntBASIC25.7■■□□□ 1.7
Col17a1Q07563 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC25.7■■□□□ 1.7
Col17a1Q07563 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC25.7■■□□□ 1.7
Col17a1Q07563 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Col17a1Q07563 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC25.7■■□□□ 1.7
Col17a1Q07563 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.7
Col17a1Q07563 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Col17a1Q07563 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Col17a1Q07563 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Col17a1Q07563 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Col17a1Q07563 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Col17a1Q07563 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
Col17a1Q07563 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Col17a1Q07563 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Col17a1Q07563 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC25.69■■□□□ 1.7
Col17a1Q07563 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Col17a1Q07563 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC25.69■■□□□ 1.7
Col17a1Q07563 Gm44719-201ENSMUST00000206404 149 ntBASIC25.69■■□□□ 1.7
Col17a1Q07563 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC25.69■■□□□ 1.7
Col17a1Q07563 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Col17a1Q07563 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Col17a1Q07563 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Col17a1Q07563 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Col17a1Q07563 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC25.69■■□□□ 1.7
Col17a1Q07563 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Col17a1Q07563 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
Col17a1Q07563 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Col17a1Q07563 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Col17a1Q07563 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Col17a1Q07563 Gm6912-201ENSMUST00000117218 544 ntBASIC25.68■■□□□ 1.7
Col17a1Q07563 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC25.68■■□□□ 1.7
Col17a1Q07563 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC25.68■■□□□ 1.7
Col17a1Q07563 Gm2308-201ENSMUST00000166539 1004 ntBASIC25.68■■□□□ 1.7
Col17a1Q07563 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC25.68■■□□□ 1.7
Col17a1Q07563 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC25.68■■□□□ 1.7
Col17a1Q07563 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
Col17a1Q07563 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC25.68■■□□□ 1.7
Col17a1Q07563 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Col17a1Q07563 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Col17a1Q07563 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Col17a1Q07563 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
Col17a1Q07563 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
Col17a1Q07563 Gm7488-201ENSMUST00000117148 684 ntBASIC25.67■■□□□ 1.7
Col17a1Q07563 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC25.67■■□□□ 1.7
Col17a1Q07563 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC25.67■■□□□ 1.7
Col17a1Q07563 Gm27306-201ENSMUST00000183970 107 ntBASIC25.67■■□□□ 1.7
Col17a1Q07563 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC25.67■■□□□ 1.7
Col17a1Q07563 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
Col17a1Q07563 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
Col17a1Q07563 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
Col17a1Q07563 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Col17a1Q07563 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
Col17a1Q07563 Idnk-204ENSMUST00000226010 1898 ntBASIC25.67■■□□□ 1.7
Col17a1Q07563 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC25.67■■□□□ 1.7
Col17a1Q07563 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Col17a1Q07563 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
Col17a1Q07563 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC25.66■■□□□ 1.7
Col17a1Q07563 Gm27430-201ENSMUST00000184585 107 ntBASIC25.66■■□□□ 1.7
Col17a1Q07563 Gm44333-201ENSMUST00000197168 107 ntBASIC25.66■■□□□ 1.7
Col17a1Q07563 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC25.66■■□□□ 1.7
Col17a1Q07563 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Col17a1Q07563 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
Col17a1Q07563 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
Col17a1Q07563 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Col17a1Q07563 Rprl2-201ENSMUST00000157150 290 ntBASIC25.66■■□□□ 1.7
Col17a1Q07563 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Col17a1Q07563 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Col17a1Q07563 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
Col17a1Q07563 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Col17a1Q07563 Gm15442-201ENSMUST00000117905 1527 ntBASIC25.65■■□□□ 1.7
Col17a1Q07563 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Col17a1Q07563 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Col17a1Q07563 Gm37153-201ENSMUST00000193637 231 ntBASIC25.65■■□□□ 1.7
Col17a1Q07563 Gm10253-201ENSMUST00000194270 940 ntBASIC25.65■■□□□ 1.7
Col17a1Q07563 AC093926.2-201ENSMUST00000214468 1228 ntBASIC25.65■■□□□ 1.7
Col17a1Q07563 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Col17a1Q07563 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Col17a1Q07563 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Col17a1Q07563 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Col17a1Q07563 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Col17a1Q07563 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Col17a1Q07563 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
Col17a1Q07563 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC25.64■■□□□ 1.69
Col17a1Q07563 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.69
Col17a1Q07563 Gm27618-201ENSMUST00000183671 60 ntBASIC25.64■■□□□ 1.69
Col17a1Q07563 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
Col17a1Q07563 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC25.64■■□□□ 1.69
Retrieved 100 of 76,532 protein–RNA pairs in 167.2 ms