Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Col8a1Q00780 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col8a1Q00780 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Col8a1Q00780 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Col8a1Q00780 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col8a1Q00780 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col8a1Q00780 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col8a1Q00780 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col8a1Q00780 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col8a1Q00780 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col8a1Q00780 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col8a1Q00780 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col8a1Q00780 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Col8a1Q00780 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 Gm15467-201ENSMUST00000120582 445 ntBASIC14.2□□□□□ -0.14
Col8a1Q00780 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC14.2□□□□□ -0.14
Col8a1Q00780 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC14.2□□□□□ -0.14
Col8a1Q00780 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC14.2□□□□□ -0.14
Col8a1Q00780 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 Gm42939-201ENSMUST00000197514 2205 ntBASIC14.2□□□□□ -0.14
Col8a1Q00780 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
Col8a1Q00780 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Col8a1Q00780 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC14.2□□□□□ -0.14
Col8a1Q00780 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 Gm18856-201ENSMUST00000178096 1374 ntBASIC14.2□□□□□ -0.14
Col8a1Q00780 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col8a1Q00780 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col8a1Q00780 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col8a1Q00780 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Col8a1Q00780 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col8a1Q00780 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col8a1Q00780 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
Col8a1Q00780 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col8a1Q00780 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC14.19□□□□□ -0.14
Col8a1Q00780 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Col8a1Q00780 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC14.19□□□□□ -0.14
Col8a1Q00780 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
Col8a1Q00780 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC14.19□□□□□ -0.14
Col8a1Q00780 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC14.19□□□□□ -0.14
Col8a1Q00780 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Col8a1Q00780 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col8a1Q00780 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col8a1Q00780 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col8a1Q00780 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Col8a1Q00780 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col8a1Q00780 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col8a1Q00780 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col8a1Q00780 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Col8a1Q00780 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col8a1Q00780 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col8a1Q00780 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col8a1Q00780 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col8a1Q00780 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col8a1Q00780 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC14.18□□□□□ -0.14
Col8a1Q00780 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC14.18□□□□□ -0.14
Col8a1Q00780 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC14.18□□□□□ -0.14
Col8a1Q00780 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col8a1Q00780 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC14.18□□□□□ -0.14
Col8a1Q00780 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col8a1Q00780 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col8a1Q00780 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Col8a1Q00780 Dmtn-210ENSMUST00000228824 2377 ntBASIC14.18□□□□□ -0.14
Col8a1Q00780 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col8a1Q00780 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col8a1Q00780 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col8a1Q00780 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col8a1Q00780 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC14.18□□□□□ -0.14
Col8a1Q00780 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col8a1Q00780 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC14.18□□□□□ -0.14
Col8a1Q00780 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col8a1Q00780 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Col8a1Q00780 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
Col8a1Q00780 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC14.17□□□□□ -0.14
Col8a1Q00780 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms