Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC18.33■□□□□ 0.52
Hmgb1P63158 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Hmgb1P63158 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Hmgb1P63158 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Hmgb1P63158 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Hmgb1P63158 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Hmgb1P63158 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Hmgb1P63158 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Hmgb1P63158 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Hmgb1P63158 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Hmgb1P63158 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
Hmgb1P63158 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Hmgb1P63158 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Hmgb1P63158 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Hmgb1P63158 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Hmgb1P63158 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Hmgb1P63158 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb1P63158 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb1P63158 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb1P63158 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb1P63158 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC18.32■□□□□ 0.52
Hmgb1P63158 Gm5297-201ENSMUST00000198555 1171 ntBASIC18.32■□□□□ 0.52
Hmgb1P63158 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb1P63158 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb1P63158 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb1P63158 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Hmgb1P63158 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC18.32■□□□□ 0.52
Hmgb1P63158 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb1P63158 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb1P63158 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb1P63158 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb1P63158 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb1P63158 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb1P63158 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb1P63158 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb1P63158 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb1P63158 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb1P63158 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb1P63158 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC18.31■□□□□ 0.52
Hmgb1P63158 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC18.31■□□□□ 0.52
Hmgb1P63158 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
Hmgb1P63158 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC18.31■□□□□ 0.52
Hmgb1P63158 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb1P63158 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb1P63158 Otx2os1-204ENSMUST00000227221 751 ntBASIC18.31■□□□□ 0.52
Hmgb1P63158 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb1P63158 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb1P63158 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Hmgb1P63158 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC18.31■□□□□ 0.52
Hmgb1P63158 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb1P63158 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb1P63158 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb1P63158 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Hmgb1P63158 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Hmgb1P63158 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC18.31■□□□□ 0.52
Hmgb1P63158 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Hmgb1P63158 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb1P63158 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb1P63158 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb1P63158 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC18.3■□□□□ 0.52
Hmgb1P63158 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb1P63158 Gm3375-201ENSMUST00000203929 796 ntBASIC18.3■□□□□ 0.52
Hmgb1P63158 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb1P63158 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb1P63158 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb1P63158 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Hmgb1P63158 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb1P63158 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb1P63158 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb1P63158 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Hmgb1P63158 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb1P63158 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb1P63158 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb1P63158 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb1P63158 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb1P63158 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC18.29■□□□□ 0.52
Hmgb1P63158 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC18.29■□□□□ 0.52
Hmgb1P63158 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb1P63158 Gm21814-202ENSMUST00000203277 873 ntBASIC18.29■□□□□ 0.52
Hmgb1P63158 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb1P63158 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb1P63158 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb1P63158 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb1P63158 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Hmgb1P63158 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Hmgb1P63158 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Hmgb1P63158 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb1P63158 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb1P63158 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb1P63158 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb1P63158 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb1P63158 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb1P63158 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb1P63158 Gm20628-201ENSMUST00000177363 3215 ntBASIC18.28■□□□□ 0.52
Hmgb1P63158 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Hmgb1P63158 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms