Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cdh11P55288 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cdh11P55288 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdh11P55288 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Cdh11P55288 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdh11P55288 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdh11P55288 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdh11P55288 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cdh11P55288 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
Cdh11P55288 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdh11P55288 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC15.22■□□□□ 0.03
Cdh11P55288 Arhgef4-208ENSMUST00000211073 171 ntBASIC15.22■□□□□ 0.03
Cdh11P55288 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Cdh11P55288 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Cdh11P55288 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdh11P55288 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdh11P55288 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cdh11P55288 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC15.22■□□□□ 0.03
Cdh11P55288 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdh11P55288 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Cdh11P55288 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdh11P55288 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC15.22■□□□□ 0.03
Cdh11P55288 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdh11P55288 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC15.21■□□□□ 0.03
Cdh11P55288 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cdh11P55288 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cdh11P55288 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Cdh11P55288 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cdh11P55288 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Cdh11P55288 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Cdh11P55288 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cdh11P55288 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Cdh11P55288 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Cdh11P55288 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Cdh11P55288 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cdh11P55288 AC166341.7-201ENSMUST00000221698 126 ntBASIC15.21■□□□□ 0.03
Cdh11P55288 AC156016.1-201ENSMUST00000227190 1035 ntBASIC15.21■□□□□ 0.03
Cdh11P55288 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Cdh11P55288 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cdh11P55288 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cdh11P55288 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Cdh11P55288 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Cdh11P55288 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.02
Cdh11P55288 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Cdh11P55288 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Cdh11P55288 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Cdh11P55288 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Cdh11P55288 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC15.2■□□□□ 0.02
Cdh11P55288 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 Mir2861-201ENSMUST00000175539 82 ntBASIC15.2■□□□□ 0.02
Cdh11P55288 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Cdh11P55288 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Cdh11P55288 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Cdh11P55288 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC15.2■□□□□ 0.02
Cdh11P55288 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
Cdh11P55288 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Cdh11P55288 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdh11P55288 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Cdh11P55288 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Cdh11P55288 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdh11P55288 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdh11P55288 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdh11P55288 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdh11P55288 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdh11P55288 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Cdh11P55288 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdh11P55288 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Cdh11P55288 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Cdh11P55288 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdh11P55288 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdh11P55288 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdh11P55288 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdh11P55288 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Cdh11P55288 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Cdh11P55288 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC15.19■□□□□ 0.02
Cdh11P55288 Timm23-208ENSMUST00000226683 750 ntBASIC15.19■□□□□ 0.02
Cdh11P55288 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdh11P55288 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdh11P55288 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Cdh11P55288 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms