Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Shmt1P50431 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Shmt1P50431 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Shmt1P50431 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Shmt1P50431 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Shmt1P50431 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
Shmt1P50431 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Shmt1P50431 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Shmt1P50431 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Shmt1P50431 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Shmt1P50431 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Shmt1P50431 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Shmt1P50431 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Shmt1P50431 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Shmt1P50431 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Shmt1P50431 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Shmt1P50431 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Shmt1P50431 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Shmt1P50431 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Shmt1P50431 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Shmt1P50431 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Shmt1P50431 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Shmt1P50431 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Shmt1P50431 Gm9103-201ENSMUST00000119371 405 ntBASIC17.62■□□□□ 0.41
Shmt1P50431 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC17.62■□□□□ 0.41
Shmt1P50431 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Shmt1P50431 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Shmt1P50431 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Shmt1P50431 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Shmt1P50431 Gm36858-201ENSMUST00000194501 2391 ntBASIC17.62■□□□□ 0.41
Shmt1P50431 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Shmt1P50431 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Shmt1P50431 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Shmt1P50431 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Shmt1P50431 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Shmt1P50431 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Shmt1P50431 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shmt1P50431 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shmt1P50431 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shmt1P50431 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shmt1P50431 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shmt1P50431 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shmt1P50431 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC17.61■□□□□ 0.41
Shmt1P50431 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
Shmt1P50431 Gm27704-201ENSMUST00000185094 107 ntBASIC17.61■□□□□ 0.41
Shmt1P50431 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shmt1P50431 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shmt1P50431 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shmt1P50431 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shmt1P50431 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Shmt1P50431 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shmt1P50431 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Shmt1P50431 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shmt1P50431 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shmt1P50431 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shmt1P50431 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Shmt1P50431 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shmt1P50431 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Shmt1P50431 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Shmt1P50431 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
Shmt1P50431 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Shmt1P50431 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Shmt1P50431 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Shmt1P50431 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Shmt1P50431 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Shmt1P50431 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Shmt1P50431 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
Shmt1P50431 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC17.6■□□□□ 0.41
Shmt1P50431 Gm29707-201ENSMUST00000196325 491 ntBASIC17.6■□□□□ 0.41
Shmt1P50431 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Shmt1P50431 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Shmt1P50431 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Shmt1P50431 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Shmt1P50431 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Shmt1P50431 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC17.6■□□□□ 0.41
Shmt1P50431 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Shmt1P50431 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Shmt1P50431 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Shmt1P50431 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Shmt1P50431 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Shmt1P50431 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
Shmt1P50431 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Shmt1P50431 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shmt1P50431 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shmt1P50431 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Shmt1P50431 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shmt1P50431 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shmt1P50431 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shmt1P50431 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Shmt1P50431 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Shmt1P50431 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shmt1P50431 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
Shmt1P50431 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Shmt1P50431 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC17.59■□□□□ 0.41
Shmt1P50431 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shmt1P50431 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC17.59■□□□□ 0.41
Shmt1P50431 Gm27741-201ENSMUST00000185060 237 ntBASIC17.59■□□□□ 0.41
Shmt1P50431 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC17.59■□□□□ 0.41
Shmt1P50431 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Shmt1P50431 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms