Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC19.97■□□□□ 0.79
Rfx1P48377 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
Rfx1P48377 Gm37292-201ENSMUST00000192062 758 ntBASIC19.97■□□□□ 0.79
Rfx1P48377 Gm10517-202ENSMUST00000192970 758 ntBASIC19.97■□□□□ 0.79
Rfx1P48377 Gm37179-201ENSMUST00000194862 823 ntBASIC19.97■□□□□ 0.79
Rfx1P48377 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC19.97■□□□□ 0.79
Rfx1P48377 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Rfx1P48377 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC19.97■□□□□ 0.79
Rfx1P48377 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Rfx1P48377 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Rfx1P48377 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Rfx1P48377 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC19.97■□□□□ 0.79
Rfx1P48377 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Rfx1P48377 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Rfx1P48377 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC19.96■□□□□ 0.79
Rfx1P48377 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Rfx1P48377 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC19.96■□□□□ 0.79
Rfx1P48377 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC19.96■□□□□ 0.79
Rfx1P48377 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Gm13158-201ENSMUST00000122007 736 ntBASIC19.96■□□□□ 0.79
Rfx1P48377 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC19.96■□□□□ 0.79
Rfx1P48377 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Gm3807-201ENSMUST00000193520 1168 ntBASIC19.96■□□□□ 0.79
Rfx1P48377 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC19.96■□□□□ 0.79
Rfx1P48377 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Rfx1P48377 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
Rfx1P48377 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Rfx1P48377 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Rfx1P48377 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Rfx1P48377 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Rfx1P48377 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Rfx1P48377 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Rfx1P48377 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Rfx1P48377 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Rfx1P48377 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Rfx1P48377 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Rfx1P48377 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Rfx1P48377 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Rfx1P48377 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Rfx1P48377 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Rfx1P48377 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Rfx1P48377 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Rfx1P48377 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Rfx1P48377 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Rfx1P48377 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Rfx1P48377 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Rfx1P48377 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Rfx1P48377 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC19.94■□□□□ 0.78
Rfx1P48377 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Rfx1P48377 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Rfx1P48377 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
Rfx1P48377 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Rfx1P48377 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Rfx1P48377 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC19.94■□□□□ 0.78
Rfx1P48377 Gm24841-201ENSMUST00000158676 357 ntBASIC19.94■□□□□ 0.78
Rfx1P48377 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Rfx1P48377 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Rfx1P48377 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Rfx1P48377 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Rfx1P48377 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC19.94■□□□□ 0.78
Rfx1P48377 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Rfx1P48377 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Rfx1P48377 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Rfx1P48377 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Rfx1P48377 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Rfx1P48377 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Rfx1P48377 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Rfx1P48377 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Rfx1P48377 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
Rfx1P48377 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC19.93■□□□□ 0.78
Rfx1P48377 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Rfx1P48377 Gm12933-201ENSMUST00000120203 872 ntBASIC19.93■□□□□ 0.78
Rfx1P48377 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Rfx1P48377 Gm27275-201ENSMUST00000184318 272 ntBASIC19.93■□□□□ 0.78
Rfx1P48377 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Rfx1P48377 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
Rfx1P48377 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Rfx1P48377 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Rfx1P48377 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Rfx1P48377 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Rfx1P48377 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 40.9 ms