Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Col18a1P39061 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Col18a1P39061 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
Col18a1P39061 Mir1895-201ENSMUST00000122615 79 ntBASIC22.21■■□□□ 1.15
Col18a1P39061 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC22.21■■□□□ 1.15
Col18a1P39061 Gm44492-201ENSMUST00000197012 141 ntBASIC22.21■■□□□ 1.15
Col18a1P39061 Gm45612-201ENSMUST00000211320 160 ntBASIC22.21■■□□□ 1.15
Col18a1P39061 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC22.21■■□□□ 1.15
Col18a1P39061 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC22.21■■□□□ 1.15
Col18a1P39061 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Col18a1P39061 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Col18a1P39061 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC22.2■■□□□ 1.15
Col18a1P39061 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.15
Col18a1P39061 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Col18a1P39061 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Col18a1P39061 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC22.2■■□□□ 1.14
Col18a1P39061 Mir7023-201ENSMUST00000185093 64 ntBASIC22.2■■□□□ 1.14
Col18a1P39061 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Col18a1P39061 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC22.2■■□□□ 1.14
Col18a1P39061 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Col18a1P39061 Gm6858-201ENSMUST00000208582 1468 ntBASIC22.2■■□□□ 1.14
Col18a1P39061 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Col18a1P39061 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Col18a1P39061 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Col18a1P39061 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Col18a1P39061 Gm44335-201ENSMUST00000196879 141 ntBASIC22.2■■□□□ 1.14
Col18a1P39061 Gm44297-201ENSMUST00000198304 141 ntBASIC22.2■■□□□ 1.14
Col18a1P39061 Gm44346-201ENSMUST00000198851 141 ntBASIC22.2■■□□□ 1.14
Col18a1P39061 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Col18a1P39061 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Col18a1P39061 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC22.19■■□□□ 1.14
Col18a1P39061 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Col18a1P39061 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
Col18a1P39061 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Col18a1P39061 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC22.19■■□□□ 1.14
Col18a1P39061 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC22.19■■□□□ 1.14
Col18a1P39061 AC155252.2-201ENSMUST00000226946 680 ntBASIC22.19■■□□□ 1.14
Col18a1P39061 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Col18a1P39061 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Col18a1P39061 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Col18a1P39061 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Col18a1P39061 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC22.18■■□□□ 1.14
Col18a1P39061 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Col18a1P39061 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
Col18a1P39061 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC22.18■■□□□ 1.14
Col18a1P39061 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Col18a1P39061 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Col18a1P39061 Gm4899-201ENSMUST00000178708 719 ntBASIC22.18■■□□□ 1.14
Col18a1P39061 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC22.18■■□□□ 1.14
Col18a1P39061 AC147366.1-201ENSMUST00000227671 852 ntBASIC22.18■■□□□ 1.14
Col18a1P39061 AC117588.1-201ENSMUST00000228510 999 ntBASIC22.18■■□□□ 1.14
Col18a1P39061 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
Col18a1P39061 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC22.18■■□□□ 1.14
Col18a1P39061 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
Col18a1P39061 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Col18a1P39061 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col18a1P39061 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC22.17■■□□□ 1.14
Col18a1P39061 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col18a1P39061 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col18a1P39061 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
Col18a1P39061 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col18a1P39061 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col18a1P39061 Gm23547-201ENSMUST00000158210 271 ntBASIC22.17■■□□□ 1.14
Col18a1P39061 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col18a1P39061 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col18a1P39061 Gm37153-201ENSMUST00000193637 231 ntBASIC22.17■■□□□ 1.14
Col18a1P39061 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC22.17■■□□□ 1.14
Col18a1P39061 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC22.17■■□□□ 1.14
Col18a1P39061 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col18a1P39061 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col18a1P39061 Gm13332-201ENSMUST00000120451 1398 ntBASIC22.17■■□□□ 1.14
Col18a1P39061 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col18a1P39061 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
Col18a1P39061 Gm38342-201ENSMUST00000195710 2980 ntBASIC22.16■■□□□ 1.14
Col18a1P39061 Gm15743-202ENSMUST00000182690 1901 ntBASIC22.16■■□□□ 1.14
Col18a1P39061 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Col18a1P39061 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Col18a1P39061 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
Col18a1P39061 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC22.16■■□□□ 1.14
Col18a1P39061 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Col18a1P39061 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
Col18a1P39061 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Col18a1P39061 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
Col18a1P39061 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC22.16■■□□□ 1.14
Col18a1P39061 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC22.16■■□□□ 1.14
Col18a1P39061 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC22.16■■□□□ 1.14
Col18a1P39061 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Col18a1P39061 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Col18a1P39061 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Col18a1P39061 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Col18a1P39061 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Col18a1P39061 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Col18a1P39061 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Col18a1P39061 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Col18a1P39061 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Col18a1P39061 Mir6404-201ENSMUST00000183699 94 ntBASIC22.15■■□□□ 1.14
Col18a1P39061 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Col18a1P39061 Gm45167-201ENSMUST00000208007 322 ntBASIC22.15■■□□□ 1.14
Col18a1P39061 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
Col18a1P39061 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms