Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Hoxd3P09027 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC12.97□□□□□ -0.33
Hoxd3P09027 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
Hoxd3P09027 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Hoxd3P09027 Cxcl14-202ENSMUST00000224801 1467 ntBASIC12.97□□□□□ -0.33
Hoxd3P09027 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Hoxd3P09027 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Hoxd3P09027 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Hoxd3P09027 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Hoxd3P09027 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Hoxd3P09027 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Hoxd3P09027 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Hoxd3P09027 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC12.96□□□□□ -0.33
Hoxd3P09027 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Hoxd3P09027 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Hoxd3P09027 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Hoxd3P09027 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Hoxd3P09027 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Hoxd3P09027 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Hoxd3P09027 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
Hoxd3P09027 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC12.96□□□□□ -0.33
Hoxd3P09027 Gm11950-201ENSMUST00000121615 838 ntBASIC12.96□□□□□ -0.33
Hoxd3P09027 Gm11860-201ENSMUST00000122346 1010 ntBASIC12.96□□□□□ -0.33
Hoxd3P09027 Gm6623-201ENSMUST00000173570 544 ntBASIC12.96□□□□□ -0.33
Hoxd3P09027 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC12.96□□□□□ -0.33
Hoxd3P09027 Gm10459-201ENSMUST00000202708 1155 ntBASIC12.96□□□□□ -0.33
Hoxd3P09027 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.33
Hoxd3P09027 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Hoxd3P09027 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.33
Hoxd3P09027 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Hoxd3P09027 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Hoxd3P09027 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Hoxd3P09027 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC12.96□□□□□ -0.34
Hoxd3P09027 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Hoxd3P09027 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Hoxd3P09027 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Hoxd3P09027 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Hoxd3P09027 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.34
Hoxd3P09027 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Hoxd3P09027 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Hoxd3P09027 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Hoxd3P09027 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hoxd3P09027 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hoxd3P09027 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hoxd3P09027 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hoxd3P09027 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
Hoxd3P09027 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC12.95□□□□□ -0.34
Hoxd3P09027 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hoxd3P09027 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Hoxd3P09027 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hoxd3P09027 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Hoxd3P09027 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Hoxd3P09027 Mir770-201ENSMUST00000103252 94 ntBASIC12.95□□□□□ -0.34
Hoxd3P09027 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hoxd3P09027 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC12.95□□□□□ -0.34
Hoxd3P09027 Gm27704-201ENSMUST00000185094 107 ntBASIC12.95□□□□□ -0.34
Hoxd3P09027 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC12.95□□□□□ -0.34
Hoxd3P09027 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC12.95□□□□□ -0.34
Hoxd3P09027 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Hoxd3P09027 AC154471.1-201ENSMUST00000224418 436 ntBASIC12.95□□□□□ -0.34
Hoxd3P09027 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hoxd3P09027 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Hoxd3P09027 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Hoxd3P09027 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hoxd3P09027 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hoxd3P09027 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hoxd3P09027 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hoxd3P09027 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Hoxd3P09027 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hoxd3P09027 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Hoxd3P09027 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hoxd3P09027 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Hoxd3P09027 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hoxd3P09027 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Hoxd3P09027 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hoxd3P09027 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC12.94□□□□□ -0.34
Hoxd3P09027 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Hoxd3P09027 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC12.94□□□□□ -0.34
Hoxd3P09027 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hoxd3P09027 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hoxd3P09027 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hoxd3P09027 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC12.94□□□□□ -0.34
Hoxd3P09027 Gm13186-201ENSMUST00000118031 316 ntBASIC12.94□□□□□ -0.34
Hoxd3P09027 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Hoxd3P09027 Gm19087-201ENSMUST00000191430 946 ntBASIC12.94□□□□□ -0.34
Hoxd3P09027 A430010J10Rik-201ENSMUST00000054470 408 ntBASIC12.94□□□□□ -0.34
Hoxd3P09027 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hoxd3P09027 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hoxd3P09027 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hoxd3P09027 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Hoxd3P09027 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hoxd3P09027 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms