Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Col3a1P08121 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Col3a1P08121 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col3a1P08121 AC121598.2-201ENSMUST00000228376 2325 ntBASIC19.85■□□□□ 0.77
Col3a1P08121 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col3a1P08121 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC19.85■□□□□ 0.77
Col3a1P08121 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col3a1P08121 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Col3a1P08121 AC114585.2-202ENSMUST00000228094 426 ntBASIC19.85■□□□□ 0.77
Col3a1P08121 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col3a1P08121 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col3a1P08121 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col3a1P08121 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC19.85■□□□□ 0.77
Col3a1P08121 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col3a1P08121 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col3a1P08121 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col3a1P08121 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC19.84■□□□□ 0.77
Col3a1P08121 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col3a1P08121 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col3a1P08121 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col3a1P08121 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC19.84■□□□□ 0.77
Col3a1P08121 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Col3a1P08121 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col3a1P08121 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC19.84■□□□□ 0.77
Col3a1P08121 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC19.84■□□□□ 0.77
Col3a1P08121 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Col3a1P08121 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Col3a1P08121 Gm32996-201ENSMUST00000199828 1447 ntBASIC19.84■□□□□ 0.77
Col3a1P08121 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC19.84■□□□□ 0.77
Col3a1P08121 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col3a1P08121 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col3a1P08121 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col3a1P08121 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col3a1P08121 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col3a1P08121 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col3a1P08121 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col3a1P08121 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col3a1P08121 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Col3a1P08121 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col3a1P08121 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC19.83■□□□□ 0.76
Col3a1P08121 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Col3a1P08121 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC19.83■□□□□ 0.76
Col3a1P08121 Gm6296-201ENSMUST00000222599 943 ntBASIC19.83■□□□□ 0.76
Col3a1P08121 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col3a1P08121 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col3a1P08121 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
Col3a1P08121 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Col3a1P08121 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Col3a1P08121 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col3a1P08121 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col3a1P08121 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col3a1P08121 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col3a1P08121 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col3a1P08121 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col3a1P08121 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col3a1P08121 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col3a1P08121 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col3a1P08121 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Col3a1P08121 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC19.82■□□□□ 0.76
Col3a1P08121 Gm9449-201ENSMUST00000207265 1011 ntBASIC19.82■□□□□ 0.76
Col3a1P08121 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC19.82■□□□□ 0.76
Col3a1P08121 AC127349.1-201ENSMUST00000224590 266 ntBASIC19.82■□□□□ 0.76
Col3a1P08121 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col3a1P08121 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC19.82■□□□□ 0.76
Col3a1P08121 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col3a1P08121 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Col3a1P08121 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col3a1P08121 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col3a1P08121 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col3a1P08121 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col3a1P08121 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col3a1P08121 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC19.81■□□□□ 0.76
Col3a1P08121 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Col3a1P08121 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col3a1P08121 Gm1818-201ENSMUST00000169406 1184 ntBASIC19.81■□□□□ 0.76
Col3a1P08121 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col3a1P08121 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col3a1P08121 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Col3a1P08121 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Col3a1P08121 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col3a1P08121 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col3a1P08121 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col3a1P08121 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col3a1P08121 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col3a1P08121 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col3a1P08121 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Col3a1P08121 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC19.81■□□□□ 0.76
Col3a1P08121 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Col3a1P08121 Gm19439-201ENSMUST00000198195 2273 ntBASIC19.8■□□□□ 0.76
Col3a1P08121 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC19.8■□□□□ 0.76
Col3a1P08121 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col3a1P08121 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col3a1P08121 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Col3a1P08121 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Col3a1P08121 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Col3a1P08121 Gm16401-202ENSMUST00000197463 2074 ntBASIC19.8■□□□□ 0.76
Col3a1P08121 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col3a1P08121 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Col3a1P08121 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col3a1P08121 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms