Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC18.39■□□□□ 0.54
Prpf40aQ9R1C7 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Prpf40aQ9R1C7 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 Gm13559-201ENSMUST00000120476 863 ntBASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Prpf40aQ9R1C7 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prpf40aQ9R1C7 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prpf40aQ9R1C7 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prpf40aQ9R1C7 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Prpf40aQ9R1C7 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prpf40aQ9R1C7 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prpf40aQ9R1C7 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prpf40aQ9R1C7 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Prpf40aQ9R1C7 Gm2274-201ENSMUST00000184539 609 ntBASIC18.38■□□□□ 0.53
Prpf40aQ9R1C7 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC18.38■□□□□ 0.53
Prpf40aQ9R1C7 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prpf40aQ9R1C7 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prpf40aQ9R1C7 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prpf40aQ9R1C7 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Gm43799-201ENSMUST00000201845 579 ntBASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 AC159205.6-201ENSMUST00000224935 887 ntBASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prpf40aQ9R1C7 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Prpf40aQ9R1C7 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
Prpf40aQ9R1C7 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Prpf40aQ9R1C7 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Prpf40aQ9R1C7 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Prpf40aQ9R1C7 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC18.36■□□□□ 0.53
Prpf40aQ9R1C7 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Prpf40aQ9R1C7 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Prpf40aQ9R1C7 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
Prpf40aQ9R1C7 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC18.36■□□□□ 0.53
Prpf40aQ9R1C7 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC18.36■□□□□ 0.53
Prpf40aQ9R1C7 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Prpf40aQ9R1C7 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Prpf40aQ9R1C7 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Prpf40aQ9R1C7 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Prpf40aQ9R1C7 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Prpf40aQ9R1C7 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Prpf40aQ9R1C7 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Prpf40aQ9R1C7 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Prpf40aQ9R1C7 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Prpf40aQ9R1C7 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Prpf40aQ9R1C7 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Prpf40aQ9R1C7 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Prpf40aQ9R1C7 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Prpf40aQ9R1C7 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Prpf40aQ9R1C7 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Prpf40aQ9R1C7 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Prpf40aQ9R1C7 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Prpf40aQ9R1C7 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Prpf40aQ9R1C7 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC18.35■□□□□ 0.53
Prpf40aQ9R1C7 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Prpf40aQ9R1C7 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Prpf40aQ9R1C7 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Prpf40aQ9R1C7 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Prpf40aQ9R1C7 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms