Protein–RNA interactions for Protein: Q9JIF7

Copb1, Coatomer subunit beta, mousemouse

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Copb1Q9JIF7 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Copb1Q9JIF7 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Copb1Q9JIF7 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Copb1Q9JIF7 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC18.31■□□□□ 0.52
Copb1Q9JIF7 Gm45203-201ENSMUST00000206384 1831 ntBASIC18.31■□□□□ 0.52
Copb1Q9JIF7 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Copb1Q9JIF7 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Copb1Q9JIF7 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Copb1Q9JIF7 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC18.31■□□□□ 0.52
Copb1Q9JIF7 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC18.31■□□□□ 0.52
Copb1Q9JIF7 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Copb1Q9JIF7 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Copb1Q9JIF7 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Copb1Q9JIF7 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Copb1Q9JIF7 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Copb1Q9JIF7 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Copb1Q9JIF7 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Copb1Q9JIF7 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Copb1Q9JIF7 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Copb1Q9JIF7 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Copb1Q9JIF7 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC18.3■□□□□ 0.52
Copb1Q9JIF7 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Copb1Q9JIF7 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Copb1Q9JIF7 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Copb1Q9JIF7 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC18.3■□□□□ 0.52
Copb1Q9JIF7 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Copb1Q9JIF7 CT025689.6-201ENSMUST00000224991 1104 ntBASIC18.3■□□□□ 0.52
Copb1Q9JIF7 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Copb1Q9JIF7 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Copb1Q9JIF7 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Copb1Q9JIF7 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Copb1Q9JIF7 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Copb1Q9JIF7 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Copb1Q9JIF7 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Copb1Q9JIF7 AC069562.2-201ENSMUST00000224644 2146 ntBASIC18.29■□□□□ 0.52
Copb1Q9JIF7 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Copb1Q9JIF7 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
Copb1Q9JIF7 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Copb1Q9JIF7 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Copb1Q9JIF7 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Copb1Q9JIF7 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Copb1Q9JIF7 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC18.29■□□□□ 0.52
Copb1Q9JIF7 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Copb1Q9JIF7 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Copb1Q9JIF7 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Copb1Q9JIF7 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Copb1Q9JIF7 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Copb1Q9JIF7 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Copb1Q9JIF7 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Copb1Q9JIF7 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Wnt10b-204ENSMUST00000226655 1807 ntBASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Copb1Q9JIF7 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Copb1Q9JIF7 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Copb1Q9JIF7 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Copb1Q9JIF7 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Copb1Q9JIF7 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Copb1Q9JIF7 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Copb1Q9JIF7 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Copb1Q9JIF7 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Copb1Q9JIF7 Gm10653-202ENSMUST00000139570 835 ntBASIC18.27■□□□□ 0.52
Copb1Q9JIF7 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC18.27■□□□□ 0.52
Copb1Q9JIF7 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC18.27■□□□□ 0.52
Copb1Q9JIF7 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Copb1Q9JIF7 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Copb1Q9JIF7 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Copb1Q9JIF7 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Copb1Q9JIF7 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Copb1Q9JIF7 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Copb1Q9JIF7 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
Copb1Q9JIF7 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Copb1Q9JIF7 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Copb1Q9JIF7 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Copb1Q9JIF7 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Copb1Q9JIF7 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Copb1Q9JIF7 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Copb1Q9JIF7 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC18.26■□□□□ 0.51
Copb1Q9JIF7 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Copb1Q9JIF7 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Copb1Q9JIF7 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Copb1Q9JIF7 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 50.1 ms