Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Trim54Q9ERP3 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 AC124569.2-201ENSMUST00000225998 818 ntBASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim54Q9ERP3 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim54Q9ERP3 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC18.07■□□□□ 0.48
Trim54Q9ERP3 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trim54Q9ERP3 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim54Q9ERP3 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim54Q9ERP3 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim54Q9ERP3 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
Trim54Q9ERP3 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC18.07■□□□□ 0.48
Trim54Q9ERP3 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC18.07■□□□□ 0.48
Trim54Q9ERP3 Gm44450-201ENSMUST00000199528 114 ntBASIC18.07■□□□□ 0.48
Trim54Q9ERP3 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim54Q9ERP3 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Trim54Q9ERP3 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim54Q9ERP3 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trim54Q9ERP3 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim54Q9ERP3 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim54Q9ERP3 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Trim54Q9ERP3 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim54Q9ERP3 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim54Q9ERP3 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
Trim54Q9ERP3 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC18.06■□□□□ 0.48
Trim54Q9ERP3 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
Trim54Q9ERP3 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim54Q9ERP3 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim54Q9ERP3 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC18.06■□□□□ 0.48
Trim54Q9ERP3 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Trim54Q9ERP3 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim54Q9ERP3 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Trim54Q9ERP3 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim54Q9ERP3 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trim54Q9ERP3 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim54Q9ERP3 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim54Q9ERP3 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trim54Q9ERP3 Gm8969-201ENSMUST00000199694 526 ntBASIC18.05■□□□□ 0.48
Trim54Q9ERP3 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim54Q9ERP3 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC18.05■□□□□ 0.48
Trim54Q9ERP3 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Trim54Q9ERP3 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim54Q9ERP3 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim54Q9ERP3 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trim54Q9ERP3 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim54Q9ERP3 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim54Q9ERP3 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim54Q9ERP3 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
Trim54Q9ERP3 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC18.04■□□□□ 0.48
Trim54Q9ERP3 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC18.04■□□□□ 0.48
Trim54Q9ERP3 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC18.04■□□□□ 0.48
Trim54Q9ERP3 Gm18421-201ENSMUST00000204122 625 ntBASIC18.04■□□□□ 0.48
Trim54Q9ERP3 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Trim54Q9ERP3 Birc2-201ENSMUST00000054878 378 ntBASIC18.04■□□□□ 0.48
Trim54Q9ERP3 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim54Q9ERP3 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim54Q9ERP3 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC18.04■□□□□ 0.48
Trim54Q9ERP3 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim54Q9ERP3 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim54Q9ERP3 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim54Q9ERP3 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Trim54Q9ERP3 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC18.04■□□□□ 0.48
Trim54Q9ERP3 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim54Q9ERP3 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Trim54Q9ERP3 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC18.03■□□□□ 0.48
Trim54Q9ERP3 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim54Q9ERP3 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim54Q9ERP3 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC18.03■□□□□ 0.48
Trim54Q9ERP3 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC18.03■□□□□ 0.48
Trim54Q9ERP3 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trim54Q9ERP3 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim54Q9ERP3 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim54Q9ERP3 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC18.03■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms