Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Lima1Q9ERG0 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Lima1Q9ERG0 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Lima1Q9ERG0 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lima1Q9ERG0 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lima1Q9ERG0 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lima1Q9ERG0 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lima1Q9ERG0 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lima1Q9ERG0 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC16.54■□□□□ 0.24
Lima1Q9ERG0 H2-K2-201ENSMUST00000174250 1049 ntBASIC16.54■□□□□ 0.24
Lima1Q9ERG0 Gm18025-201ENSMUST00000221733 862 ntBASIC16.54■□□□□ 0.24
Lima1Q9ERG0 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lima1Q9ERG0 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lima1Q9ERG0 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lima1Q9ERG0 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
Lima1Q9ERG0 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lima1Q9ERG0 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lima1Q9ERG0 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lima1Q9ERG0 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lima1Q9ERG0 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Gm5643-201ENSMUST00000117081 966 ntBASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 AC166341.7-201ENSMUST00000221698 126 ntBASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Nrn1-203ENSMUST00000223611 1443 ntBASIC16.53■□□□□ 0.24
Lima1Q9ERG0 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lima1Q9ERG0 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lima1Q9ERG0 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Lima1Q9ERG0 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Lima1Q9ERG0 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lima1Q9ERG0 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC16.52■□□□□ 0.24
Lima1Q9ERG0 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Lima1Q9ERG0 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Lima1Q9ERG0 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lima1Q9ERG0 Gm12669-201ENSMUST00000122162 1009 ntBASIC16.52■□□□□ 0.24
Lima1Q9ERG0 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Lima1Q9ERG0 Gm42545-201ENSMUST00000202755 922 ntBASIC16.52■□□□□ 0.24
Lima1Q9ERG0 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC16.52■□□□□ 0.24
Lima1Q9ERG0 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC16.52■□□□□ 0.24
Lima1Q9ERG0 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lima1Q9ERG0 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lima1Q9ERG0 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
Lima1Q9ERG0 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Lima1Q9ERG0 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Lima1Q9ERG0 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Lima1Q9ERG0 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
Lima1Q9ERG0 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Gm10653-202ENSMUST00000139570 835 ntBASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Gm6576-201ENSMUST00000169678 883 ntBASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Lima1Q9ERG0 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms