Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdc40Q9DC48 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdc40Q9DC48 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC15.52■□□□□ 0.08
Cdc40Q9DC48 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Cdc40Q9DC48 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Cdc40Q9DC48 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Cdc40Q9DC48 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
Cdc40Q9DC48 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Cdc40Q9DC48 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Cdc40Q9DC48 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.07
Cdc40Q9DC48 Gm43294-201ENSMUST00000202850 2490 ntBASIC15.52■□□□□ 0.07
Cdc40Q9DC48 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Cdc40Q9DC48 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
Cdc40Q9DC48 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Gm13474-201ENSMUST00000122466 815 ntBASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Gm6345-202ENSMUST00000180900 204 ntBASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Gm10459-201ENSMUST00000202708 1155 ntBASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdc40Q9DC48 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdc40Q9DC48 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Cdc40Q9DC48 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 70.5 ms