Protein–RNA interactions for Protein: Q9CQX5

Cldnd1, Claudin domain-containing protein 1, mousemouse

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldnd1Q9CQX5 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cldnd1Q9CQX5 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cldnd1Q9CQX5 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC17.12■□□□□ 0.33
Cldnd1Q9CQX5 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cldnd1Q9CQX5 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cldnd1Q9CQX5 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cldnd1Q9CQX5 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Cldnd1Q9CQX5 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC17.12■□□□□ 0.33
Cldnd1Q9CQX5 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
Cldnd1Q9CQX5 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cldnd1Q9CQX5 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cldnd1Q9CQX5 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cldnd1Q9CQX5 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cldnd1Q9CQX5 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cldnd1Q9CQX5 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Gm43935-201ENSMUST00000203569 1050 ntBASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cldnd1Q9CQX5 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cldnd1Q9CQX5 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Cldnd1Q9CQX5 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Cldnd1Q9CQX5 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Cldnd1Q9CQX5 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
Cldnd1Q9CQX5 Gm4995-201ENSMUST00000117247 432 ntBASIC17.1■□□□□ 0.33
Cldnd1Q9CQX5 Gm14140-201ENSMUST00000119999 995 ntBASIC17.1■□□□□ 0.33
Cldnd1Q9CQX5 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cldnd1Q9CQX5 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC17.1■□□□□ 0.33
Cldnd1Q9CQX5 Gm10576-201ENSMUST00000191927 825 ntBASIC17.1■□□□□ 0.33
Cldnd1Q9CQX5 Gm6089-201ENSMUST00000197666 938 ntBASIC17.1■□□□□ 0.33
Cldnd1Q9CQX5 AC127349.1-201ENSMUST00000224590 266 ntBASIC17.1■□□□□ 0.33
Cldnd1Q9CQX5 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cldnd1Q9CQX5 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cldnd1Q9CQX5 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cldnd1Q9CQX5 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cldnd1Q9CQX5 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cldnd1Q9CQX5 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cldnd1Q9CQX5 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 AV026068-213ENSMUST00000223675 1171 ntBASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cldnd1Q9CQX5 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Cldnd1Q9CQX5 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cldnd1Q9CQX5 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Cldnd1Q9CQX5 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cldnd1Q9CQX5 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cldnd1Q9CQX5 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Cldnd1Q9CQX5 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cldnd1Q9CQX5 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cldnd1Q9CQX5 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cldnd1Q9CQX5 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Cldnd1Q9CQX5 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Cldnd1Q9CQX5 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cldnd1Q9CQX5 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cldnd1Q9CQX5 Gfra2-202ENSMUST00000227633 1480 ntBASIC17.08■□□□□ 0.32
Cldnd1Q9CQX5 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cldnd1Q9CQX5 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Cldnd1Q9CQX5 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC17.08■□□□□ 0.32
Cldnd1Q9CQX5 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC17.08■□□□□ 0.32
Cldnd1Q9CQX5 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cldnd1Q9CQX5 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cldnd1Q9CQX5 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cldnd1Q9CQX5 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cldnd1Q9CQX5 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cldnd1Q9CQX5 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms